Specific Phenotypes for Bacteroides ovatus ATCC 8483 in carbon source experiments

Condition Gene Description Fitness Cons.
Amylopectin from Potato BACOVA_00397 Sigma-70 region 2 -1.5  
Amylopectin from Potato BACOVA_00865 SusD family protein +1.3  
Amylopectin from Potato BACOVA_01787 hypothetical protein -2.4  
Amylopectin from Potato BACOVA_02442 aspartate-alanine antiporter +1.7  
Amylopectin from Potato BACOVA_03478 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein +2.6  
Amylopectin from Potato BACOVA_03514 alpha amylase, catalytic domain protein -4.3  
Amylopectin from Potato BACOVA_03515 hypothetical protein -2.3 Yes
Amylopectin from Potato BACOVA_03516 hypothetical protein -3.7  
Amylopectin from Potato BACOVA_03737 hypothetical protein -1.6  
Amylopectin from Potato BACOVA_03996 hypothetical protein +3.9  
Amylopectin from Potato BACOVA_03998 polysaccharide biosynthesis protein +2.3  
Amylopectin from Potato BACOVA_04504 SusD family protein -3.1  
Amylopectin from Potato BACOVA_04505 TonB-linked outer membrane protein, SusC/RagA family -3.0  
Arabinoxylan (Rye Flour) BACOVA_01361 deoxyribose-phosphate aldolase -1.7  
Arabinoxylan (Rye Flour) BACOVA_01708 Alpha-L-arabinofuranosidase domain protein -1.4  
Arabinoxylan (Rye Flour) BACOVA_03431 hypothetical protein -1.2  
B-glucan from yeast BACOVA_00572 hypothetical protein +1.2  
B-glucan from yeast BACOVA_00796 hypothetical protein -1.3  
B-glucan from yeast BACOVA_00941 hypothetical protein -1.3  
B-glucan from yeast BACOVA_00942 TonB-linked outer membrane protein, SusC/RagA family -2.2  
B-glucan from yeast BACOVA_00943 SusD family protein -2.2 Yes
B-glucan from yeast BACOVA_00944 O-Glycosyl hydrolase family 30 -2.3  
B-glucan from yeast BACOVA_00945 bombesin-like protein -1.4  
B-glucan from yeast BACOVA_00946 glycosyl hydrolase family 3 C-terminal domain protein +1.0  
B-glucan from yeast BACOVA_03478 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein +1.1  
B-glucan from yeast BACOVA_05496 hypothetical protein -1.8  
Beta-Lactose BACOVA_01990 Beta galactosidase small chain -3.1 Yes
Chondroitin sulfate A sodium salt from bovine trachea BACOVA_01361 deoxyribose-phosphate aldolase -2.9 Yes
Chondroitin sulfate A sodium salt from bovine trachea BACOVA_01968 arylsulfatase -3.4 Yes
Chondroitin sulfate A sodium salt from bovine trachea BACOVA_01995 hypothetical protein -1.8 Yes
Chondroitin sulfate A sodium salt from bovine trachea BACOVA_01996 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein -4.3 Yes
Chondroitin sulfate A sodium salt from bovine trachea BACOVA_01998 TonB-linked outer membrane protein, SusC/RagA family -4.2 Yes
Chondroitin sulfate A sodium salt from bovine trachea BACOVA_01999 SusD family protein -3.9 Yes
Chondroitin sulfate A sodium salt from bovine trachea BACOVA_05078 mucin-desulfating sulfatase -2.2 Yes
D-Arabinose BACOVA_00073 ATP synthase alpha/beta family, nucleotide-binding domain protein +1.7  
D-Arabinose BACOVA_00074 ATP synthase alpha/beta family, nucleotide-binding domain protein +1.5  
D-Arabinose BACOVA_00420 phospholipase, patatin family -1.1  
D-Arabinose BACOVA_00687 hypothetical protein +2.4  
D-Arabinose BACOVA_00719 phospholipase, patatin family +1.8  
D-Arabinose BACOVA_00865 SusD family protein +1.4  
D-Arabinose BACOVA_00866 TonB-linked outer membrane protein, SusC/RagA family +1.6  
D-Arabinose BACOVA_00884 sigma factor regulatory protein, FecR/PupR family +4.5  
D-Arabinose BACOVA_02442 aspartate-alanine antiporter +1.7  
D-Arabinose BACOVA_02824 DNA mismatch repair protein MutS +2.2  
D-Arabinose BACOVA_03105 tetratricopeptide repeat protein +1.5  
D-Arabinose BACOVA_03267 TrkA C-terminal domain protein -1.4  
D-Arabinose BACOVA_03310 aconitate hydratase +1.6  
D-Arabinose BACOVA_03422 glycosyl hydrolase, family 31 +1.1  
D-Arabinose BACOVA_03423 hypothetical protein +1.4  
D-Arabinose BACOVA_03424 glycosyl hydrolase, family 43 +1.4  
D-Arabinose BACOVA_03854 L-fucose:H+ symporter permease -1.8 Yes
D-Arabinose BACOVA_05069 PhoH family protein +1.3  
D-Galactose BACOVA_00340 hypothetical protein -1.7  
D-Galactose BACOVA_00735 DNA-binding protein HU -1.5  
D-Galactose BACOVA_01244 hypothetical protein +1.3  
D-Galactose BACOVA_01245 AP endonuclease, family 2 +2.2  
D-Galactose BACOVA_01250 sigma factor regulatory protein, FecR/PupR family +1.6  
D-Galactose BACOVA_01542 hypothetical protein +1.1  
D-Galactose BACOVA_01544 Fibrobacter succinogene major paralogous domain protein +1.1  
D-Galactose BACOVA_01545 hypothetical protein +2.0  
D-Galactose BACOVA_01549 hypothetical protein +1.5  
D-Galactose BACOVA_01661 oxidoreductase, NAD-binding domain protein -1.6  
D-Galactose BACOVA_01885 hypothetical protein +1.5  
D-Galactose BACOVA_01890 CorA-like protein +1.7  
D-Galactose BACOVA_02012 putative uracil phosphoribosyltransferase -1.3  
D-Galactose BACOVA_02526 succinate-CoA ligase, alpha subunit +2.2  
D-Galactose BACOVA_03192 AMP-binding enzyme -1.5  
D-Galactose BACOVA_04145 thioredoxin +1.5  
D-Galactose BACOVA_05191 hypothetical protein +1.1  
D-Galactose BACOVA_05200 CBS domain protein +3.0  
D-Galactose BACOVA_05449 phosphate transporter family protein -2.8  
D-Galactose BACOVA_05450 conserved hypothetical protein TIGR00153 -2.1  
D-Galactose BACOVA_05451 SNARE-like domain protein +2.8  
D-Galactose BACOVA_05577 SusD family protein +1.7  
D-Galactose BACOVA_05578 PKD domain protein +1.9  
D-Galactose BACOVA_05579 PKD domain protein +1.3  
D-Glucosamine Hydrochloride BACOVA_00173 hypothetical protein +1.4  
D-Glucosamine Hydrochloride BACOVA_02447 hypothetical protein +1.3  
D-Glucosamine Hydrochloride BACOVA_02960 Hexokinase -2.8 Yes
D-Glucosamine Hydrochloride BACOVA_03816 hypothetical protein variable  
D-Glucosamine Hydrochloride BACOVA_05471 Tat pathway signal sequence domain protein +3.4  
D-Glucosamine Hydrochloride BACOVA_05472 arylsulfatase +3.5  
D-Glucosamine Hydrochloride BACOVA_05475 SusD family protein +2.9  
D-Glucosamine Hydrochloride BACOVA_05476 TonB-linked outer membrane protein, SusC/RagA family +1.1 Yes
D-Glucosamine Hydrochloride BACOVA_05478 heparinase II/III-like protein +3.0  
D-Glucose BACOVA_03196 methylglyoxal synthase -1.0  
D-Glucose BACOVA_04579 4Fe-4S binding domain protein -2.8  
D-Glucose BACOVA_04581 iron-only hydrogenase maturation rSAM protein HydE -2.5  
D-Glucose BACOVA_04582 iron-only hydrogenase maturation rSAM protein HydG -2.5  
D-Glucose BACOVA_04583 hydrogenase maturation GTPase HydF -2.6  
D-Mannose BACOVA_04579 4Fe-4S binding domain protein -1.3  
D-Mannose BACOVA_04581 iron-only hydrogenase maturation rSAM protein HydE -1.3  
D-Mannose BACOVA_04582 iron-only hydrogenase maturation rSAM protein HydG -1.2  
D-Mannose BACOVA_04583 hydrogenase maturation GTPase HydF -1.3  
D-Xylose BACOVA_02535 MFS transporter, SP family -3.3 Yes
Galactomannan from guar BACOVA_02088 N-acylglucosamine 2-epimerase -4.6  
Galactomannan from guar BACOVA_02089 transporter, major facilitator family protein -1.1  
Galactomannan from guar BACOVA_02090 hypothetical protein -1.8  
Galactomannan from guar BACOVA_02091 alpha-galactosidase -4.5  
Galactomannan from guar BACOVA_02095 SusD family protein -4.1  
Galactomannan from guar BACOVA_02096 TonB-linked outer membrane protein, SusC/RagA family -3.8  
Galactomannan from guar BACOVA_02097 response regulator receiver domain protein -3.9  
Glucomannan (konjac) BACOVA_02088 N-acylglucosamine 2-epimerase -3.2  
Glucomannan (konjac) BACOVA_02089 transporter, major facilitator family protein -1.7  
Glucomannan (konjac) BACOVA_02090 hypothetical protein -1.7  
Glucomannan (konjac) BACOVA_02095 SusD family protein -4.2  
Glucomannan (konjac) BACOVA_02096 TonB-linked outer membrane protein, SusC/RagA family -3.6  
Glucomannan (konjac) BACOVA_02097 response regulator receiver domain protein -3.8  
Glucomannan (konjac) BACOVA_03190 AP endonuclease, family 2 -2.2  
Glucomannan (konjac) BACOVA_03691 hypothetical protein -1.8  
Glucomannan (konjac) BACOVA_04468 hypothetical protein -1.1  
Glycogen from bovine liver BACOVA_00211 glycine C-acetyltransferase -1.2  
Glycogen from bovine liver BACOVA_03514 alpha amylase, catalytic domain protein -1.3  
Glycogen from bovine liver BACOVA_03516 hypothetical protein -1.6  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_00140 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase -1.5  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_00572 hypothetical protein +1.2  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_00939 glycerophosphodiester phosphodiesterase family protein -1.3  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_01996 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein -5.2 Yes
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_01998 TonB-linked outer membrane protein, SusC/RagA family -5.1 Yes
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_01999 SusD family protein -4.9 Yes
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_02000 hypothetical protein -3.6 Yes
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_02215 hypothetical protein +2.0  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_02508 Tat pathway signal sequence domain protein -2.0  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_03539 hypothetical protein -1.5  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_04138 transporter, lactate permease (LctP) family -1.1  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_04237 hypothetical protein +1.8  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_04890 GSCFA family protein -1.4  
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_05232 hypothetical protein -3.3 Yes
Hyaluronic acid sodium salt from Streptococcus equi BACOVA_05233 hypothetical protein -2.7 Yes
Inulin from chicory BACOVA_04504 SusD family protein -5.1 Yes
Inulin from chicory BACOVA_04505 TonB-linked outer membrane protein, SusC/RagA family -4.7  
L-Rhamnose monohydrate BACOVA_03603 L-rhamnose-proton symport protein (RhaT) -5.2 Yes
Locust bean gum BACOVA_02088 N-acylglucosamine 2-epimerase -4.4  
Locust bean gum BACOVA_02089 transporter, major facilitator family protein -1.9  
Locust bean gum BACOVA_02090 hypothetical protein -2.7  
Locust bean gum BACOVA_02091 alpha-galactosidase -2.2  
Locust bean gum BACOVA_02095 SusD family protein -3.7  
Locust bean gum BACOVA_02096 TonB-linked outer membrane protein, SusC/RagA family -3.7  
Locust bean gum BACOVA_02097 response regulator receiver domain protein -3.6  
Mucin from porcine stomach,Type II BACOVA_04013 glycosyltransferase, group 2 family protein +1.2  
N-Acetyl-D-Glucosamine BACOVA_00435 sigma factor regulatory protein, FecR/PupR family +1.2  
N-Acetyl-D-Glucosamine BACOVA_00620 sigma factor regulatory protein, FecR/PupR family +1.4  
N-Acetyl-D-Glucosamine BACOVA_01283 peptidase, S41 family +1.2  
N-Acetyl-D-Glucosamine BACOVA_01948 Heptosyltransferase +1.9  
N-Acetyl-D-Glucosamine BACOVA_05191 hypothetical protein +1.7  
Pectin from apple BACOVA_04904 response regulator receiver domain protein +1.3 Yes
Pectin from apple BACOVA_04909 hypothetical protein +1.2  
Pectin from apple BACOVA_04910 SusD family protein +1.2  
Pectin from apple BACOVA_04911 TonB-linked outer membrane protein, SusC/RagA family +1.2 Yes
Pectin from apple BACOVA_05002 polygalacturonase (pectinase) +1.1  
Pectin from citrus peel BACOVA_04904 response regulator receiver domain protein +1.6 Yes
Pectin from citrus peel BACOVA_04910 SusD family protein +1.5  
Pectin from citrus peel BACOVA_04911 TonB-linked outer membrane protein, SusC/RagA family +1.5 Yes
Pullulan BACOVA_01962 hypothetical protein -1.9  
Pullulan BACOVA_01963 hypothetical protein -1.5  
Pullulan BACOVA_01996 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein -2.7  
Pullulan BACOVA_01998 TonB-linked outer membrane protein, SusC/RagA family -2.7  
Pullulan BACOVA_01999 SusD family protein -2.9  
Pullulan BACOVA_02000 hypothetical protein -1.8  
Pullulan BACOVA_03075 HAD hydrolase, TIGR02254 family -1.6  
Pullulan BACOVA_03515 hypothetical protein +3.0  
Pullulan BACOVA_03516 hypothetical protein +2.9  
Pullulan BACOVA_04118 hypothetical protein -1.8  
Pullulan BACOVA_05232 hypothetical protein -1.3  
Pustulan (b-1-6 glucan) BACOVA_00941 hypothetical protein -2.6  
Pustulan (b-1-6 glucan) BACOVA_00942 TonB-linked outer membrane protein, SusC/RagA family -3.1  
Pustulan (b-1-6 glucan) BACOVA_00943 SusD family protein -3.7  
Pustulan (b-1-6 glucan) BACOVA_00944 O-Glycosyl hydrolase family 30 -2.9  
Rhamnogalacturonan from soy bean pectic fibre BACOVA_03416 GroES-like protein -1.4 Yes
Tara gum BACOVA_02088 N-acylglucosamine 2-epimerase -4.5  
Tara gum BACOVA_02089 transporter, major facilitator family protein -1.4  
Tara gum BACOVA_02090 hypothetical protein -2.1  
Tara gum BACOVA_02091 alpha-galactosidase -2.9  
Tara gum BACOVA_02095 SusD family protein -4.3  
Tara gum BACOVA_02096 TonB-linked outer membrane protein, SusC/RagA family -4.3  
Tara gum BACOVA_02097 response regulator receiver domain protein -4.1  
Wheat Arabinoxylan BACOVA_00071 putative ATP synthase, subunit E -2.1  
Wheat Arabinoxylan BACOVA_00074 ATP synthase alpha/beta family, nucleotide-binding domain protein -1.4  
Wheat Arabinoxylan BACOVA_01361 deoxyribose-phosphate aldolase -2.8  
Wheat Arabinoxylan BACOVA_01708 Alpha-L-arabinofuranosidase domain protein -1.0  
Wheat Arabinoxylan BACOVA_04489 hypothetical protein -1.7  
Xylan from Beechwood BACOVA_03422 glycosyl hydrolase, family 31 +1.1  
Xyloglucan from tamarind BACOVA_02648 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein -1.7  
Xyloglucan from tamarind BACOVA_02651 SusD family protein -1.8  
Xyloglucan from tamarind BACOVA_02652 TonB-linked outer membrane protein, SusC/RagA family -1.7  
Xyloglucan from tamarind BACOVA_02653 cellulase (glycosyl hydrolase family 5) -1.6  
Xyloglucan from tamarind BACOVA_04504 SusD family protein -1.9  
Xyloglucan from tamarind BACOVA_04505 TonB-linked outer membrane protein, SusC/RagA family -1.7  
a-Cyclodextrin BACOVA_01213 transcriptional regulator, AraC family -2.0  
a-Cyclodextrin BACOVA_01217 TonB-linked outer membrane protein, SusC/RagA family -2.4  
a-Cyclodextrin BACOVA_01218 SusD family protein -2.4  
a-Cyclodextrin BACOVA_01219 hypothetical protein -2.1  
amylopectin from maize BACOVA_00277 PKD domain protein -1.3  
amylopectin from maize BACOVA_00607 nitroreductase family protein -1.6  
amylopectin from maize BACOVA_01213 transcriptional regulator, AraC family -2.8  
amylopectin from maize BACOVA_01214 glycosyl hydrolase, family 31 +1.2  
amylopectin from maize BACOVA_01217 TonB-linked outer membrane protein, SusC/RagA family -3.1  
amylopectin from maize BACOVA_01218 SusD family protein -3.3  
amylopectin from maize BACOVA_01219 hypothetical protein -2.8  
amylopectin from maize BACOVA_01242 transporter, major facilitator family protein -1.6  
amylopectin from maize BACOVA_01785 hypothetical protein -1.3  
amylopectin from maize BACOVA_03346 putative alpha-1,2-mannosidase +1.0  
amylopectin from maize BACOVA_03514 alpha amylase, catalytic domain protein -3.8  
amylopectin from maize BACOVA_03515 hypothetical protein -2.2 Yes
amylopectin from maize BACOVA_03516 hypothetical protein -2.5  
amylopectin from maize BACOVA_05575 hypothetical protein variable  
b-Glucan from Beet (1,2-b-Glucan) BACOVA_03380 glycosyl hydrolase family 3 N-terminal domain protein -2.1 Yes
b-Glucan from Beet (1,2-b-Glucan) BACOVA_03381 SusD family protein -3.0 Yes
b-Glucan from Beet (1,2-b-Glucan) BACOVA_03382 TonB-linked outer membrane protein, SusC/RagA family -2.7 Yes
b-Glucan from Oat BACOVA_03422 glycosyl hydrolase, family 31 +1.2  
b-Glucan from Oat BACOVA_03423 hypothetical protein +1.3  
b-Glucan from Oat BACOVA_03424 glycosyl hydrolase, family 43 +1.1  
b-Mannan borohydrate reduced carob seed BACOVA_00033 polygalacturonase (pectinase) +1.7  
b-Mannan borohydrate reduced carob seed BACOVA_00340 hypothetical protein -1.7  
b-Mannan borohydrate reduced carob seed BACOVA_01575 hypothetical protein -1.4  
b-Mannan borohydrate reduced carob seed BACOVA_01576 hypothetical protein -1.4  
b-Mannan borohydrate reduced carob seed BACOVA_01577 beta-lactamase -1.3  
b-Mannan borohydrate reduced carob seed BACOVA_02088 N-acylglucosamine 2-epimerase -3.6  
b-Mannan borohydrate reduced carob seed BACOVA_02089 transporter, major facilitator family protein -1.7  
b-Mannan borohydrate reduced carob seed BACOVA_02090 hypothetical protein -3.3  
b-Mannan borohydrate reduced carob seed BACOVA_02095 SusD family protein -4.6  
b-Mannan borohydrate reduced carob seed BACOVA_02096 TonB-linked outer membrane protein, SusC/RagA family -4.2  
b-Mannan borohydrate reduced carob seed BACOVA_02097 response regulator receiver domain protein -4.3  
b-Mannan borohydrate reduced carob seed BACOVA_04345 bacterial capsule synthesis protein -1.4  
b-Mannan borohydrate reduced carob seed BACOVA_04587 putative neutral zinc metallopeptidase -1.2  
b-Mannan borohydrate reduced carob seed BACOVA_05200 CBS domain protein -1.6  
b-Mannan borohydrate reduced carob seed BACOVA_05496 hypothetical protein -1.8  
b-Mannan borohydrate reduced carob seed BACOVA_05617 RNA polymerase sigma-70 factor +1.2  
beta-Cyclodextrin BACOVA_01217 TonB-linked outer membrane protein, SusC/RagA family -1.3  
beta-Cyclodextrin BACOVA_01218 SusD family protein -1.6  
dextran, Mw ~200,000 BACOVA_02784 hypothetical protein -5.1 Yes
dextran, Mw ~200,000 BACOVA_02785 hypothetical protein -3.1 Yes
dextran, Mw ~200,000 BACOVA_02786 SusD family protein -4.9 Yes
dextran, Mw ~200,000 BACOVA_02787 TonB-linked outer membrane protein, SusC/RagA family -5.3 Yes
dextran, Mw ~200,000 BACOVA_02788 hypothetical protein -3.9 Yes
dextran, Mw ~200,000 BACOVA_05163 ribonuclease Z -1.1  
dextran, Mw ~200,000 BACOVA_05375 hypothetical protein -1.2  
polygalacturonic acid BACOVA_00832 hypothetical protein +1.3 Yes
polygalacturonic acid BACOVA_00833 TonB-dependent receptor +1.4 Yes
polygalacturonic acid BACOVA_04904 response regulator receiver domain protein -1.5 Yes
polygalacturonic acid BACOVA_04910 SusD family protein -1.8  
polygalacturonic acid BACOVA_04911 TonB-linked outer membrane protein, SusC/RagA family -1.6 Yes