| Condition | Gene | Description | Fitness | Cons. |
|---|
| 1,4-Butanediol | Atu0626 | alcohol dehydrogenase | -1.4 | |
| 1,4-Butanediol | Atu0663 | hypothetical protein | -2.2 | |
| 1,4-Butanediol | Atu2224 | aldehyde dehydrogenase | -4.2 | |
| 1,4-Butanediol | Atu5138 | gamma hydroxybutyrate dehydrogenase | -1.8 | Yes |
| 1,5-Pentanediol | Atu0626 | alcohol dehydrogenase | -1.2 | |
| 1,5-Pentanediol | Atu0663 | hypothetical protein | -3.3 | |
| 1,5-Pentanediol | Atu0664 | transcriptional regulator, LysR family | -1.6 | |
| 1,5-Pentanediol | Atu2224 | aldehyde dehydrogenase | -3.8 | |
| 1,5-Pentanediol | Atu5136 | transcriptional repressor of the blcABC operon | +1.4 | |
| 2-6-dihydroxybenzoic acid | Atu2527 | dioxygenase | -1.3 | |
| 2-6-dihydroxybenzoic acid | Atu2528 | maleylacetate reductase | -1.5 | |
| 2-6-dihydroxybenzoic acid | Atu2529 | hypothetical protein | -1.9 | |
| 2-6-dihydroxybenzoic acid | Atu4547 | 3-oxoadipate CoA-transferase subunit A | -2.5 | |
| 2-6-dihydroxybenzoic acid | Atu4548 | 3-oxoadipate CoA-transferase subunit B | -2.6 | |
| 2-6-dihydroxybenzoic acid | Atu4549 | beta-ketoadipyl CoA thiolase | -3.0 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu0195 | gluconokinase | -1.7 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -2.8 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu2296 | 2-dehydro-3-deoxygluconokinase | -1.4 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu4687 | amino acid ABC transporter substrate-binding protein | -3.5 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu4688 | amino acid ABC transporter permease | -3.3 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu4689 | amino acid ABC transporter permease | -3.1 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu4690 | amino acid ABC transporter ATPase/permease | -3.4 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu4691 | 2-hydroxyacid dehydrogenase | -4.7 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu4743 | LacI family transcriptional regulator | +2.2 | |
| 2-Keto-D-gluconic acid hemicalcium salt hydrate | Atu4841 | DeoR family transcriptional regulator | +1.3 | |
| 3-aminobenzoate | Atu0626 | alcohol dehydrogenase | -1.6 | |
| 3-aminobenzoate | Atu0663 | hypothetical protein | -2.2 | |
| 3-aminobenzoate | Atu0664 | transcriptional regulator, LysR family | -1.8 | |
| 3-aminobenzoate | Atu2224 | aldehyde dehydrogenase | -3.1 | |
| 4-Aminobutyric acid | Atu0626 | alcohol dehydrogenase | -1.2 | |
| 4-Aminobutyric acid | Atu0664 | transcriptional regulator, LysR family | -1.0 | |
| 4-Aminobutyric acid | Atu2224 | aldehyde dehydrogenase | -1.8 | Yes |
| 4-Aminobutyric acid | Atu2422 | ABC transporter, substrate binding protein (amino acid) | -1.0 | |
| 4-Aminobutyric acid | Atu2424 | ABC transporter, nucleotide binding/ATPase protein | -1.7 | |
| 4-Aminobutyric acid | Atu2425 | ABC transporter, nucleotide binding/ATPase protein | -1.5 | |
| 4-Aminobutyric acid | Atu2426 | ABC transporter, membrane spanning protein (branched chain amino acid) | -1.3 | |
| 4-Aminobutyric acid | Atu2427 | ABC transporter, membrane spanning protein | -1.5 | |
| 4-Aminobutyric acid | Atu3291 | Lpr family transcriptional regulator | -1.8 | |
| 4-Aminobutyric acid | Atu3292 | alanine racemase | -1.9 | |
| 4-Aminobutyric acid | Atu3293 | D-amino acid dehydrogenase small subunit | -3.4 | |
| 4-Aminobutyric acid | Atu3329 | beta alanine--pyruvate transaminase | -1.3 | Yes |
| 4-Aminobutyric acid | Atu4825 | dehydrogenase | -1.2 | |
| 4-Hydroxybenzoic Acid | Atu0671 | hypothetical protein | -1.6 | |
| 4-Hydroxybenzoic Acid | Atu0931 | penicillin binding protein | variable | |
| 4-Hydroxybenzoic Acid | Atu1369 | HIT family protein | -1.3 | |
| 4-Hydroxybenzoic Acid | Atu1499 | penicillin binding protein | variable | Yes |
| 4-Hydroxybenzoic Acid | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -1.2 | |
| 4-Hydroxybenzoic Acid | Atu2493 | NAD(P)+ transhydrogenase | -1.9 | |
| 4-Hydroxybenzoic Acid | Atu2494 | NAD(P)+ transhydrogenase beta chain | -1.7 | |
| 4-Hydroxybenzoic Acid | Atu3718 | hypothetical protein | -1.3 | |
| 4-Hydroxybenzoic Acid | Atu4538 | 3-carboxy-cis,cis-muconate cycloisomerase | -4.5 | |
| 4-Hydroxybenzoic Acid | Atu4539 | protocatechuate 3,4-dioxygenase alpha chain | -2.0 | Yes |
| 4-Hydroxybenzoic Acid | Atu4542 | beta-ketoadipate enol-lactone hydrolase | -3.2 | Yes |
| 4-Hydroxybenzoic Acid | Atu4543 | LysR family transcriptional regulator | -1.3 | Yes |
| 4-Hydroxybenzoic Acid | Atu4547 | 3-oxoadipate CoA-transferase subunit A | -4.0 | Yes |
| 4-Hydroxybenzoic Acid | Atu4548 | 3-oxoadipate CoA-transferase subunit B | -4.1 | Yes |
| 4-Hydroxybenzoic Acid | Atu4549 | beta-ketoadipyl CoA thiolase | -4.4 | Yes |
| 4-Hydroxyphenylpropionic acid | Atu0663 | hypothetical protein | -1.4 | |
| 4-Hydroxyphenylpropionic acid | Atu0807 | metallo-beta-lactamase superfamily protein | -2.8 | |
| 4-Hydroxyphenylpropionic acid | Atu1414 | acyl-CoA dehydrogenase | -2.8 | |
| 4-Hydroxyphenylpropionic acid | Atu1415 | 3-hydroxyacyl-CoA dehydrogenase type II | -3.0 | |
| 4-Hydroxyphenylpropionic acid | Atu1416 | long-chain-fatty-acid-CoA-ligase | +3.7 | |
| 4-Hydroxyphenylpropionic acid | Atu1421 | hypothetical protein | -3.1 | |
| 4-Hydroxyphenylpropionic acid | Atu2252 | hypothetical protein | -1.5 | Yes |
| 4-Hydroxyphenylpropionic acid | Atu2495 | flavoprotein oxidoreductase | -1.3 | |
| 4-Hydroxyphenylpropionic acid | Atu4538 | 3-carboxy-cis,cis-muconate cycloisomerase | -2.2 | |
| 4-Hydroxyphenylpropionic acid | Atu4539 | protocatechuate 3,4-dioxygenase alpha chain | -1.2 | |
| 4-Hydroxyphenylpropionic acid | Atu4542 | beta-ketoadipate enol-lactone hydrolase | -2.3 | |
| 4-Hydroxyphenylpropionic acid | Atu4544 | 4-hydroxybenzoate 3-monooxygenase | -1.2 | |
| 4-Hydroxyphenylpropionic acid | Atu4545 | AraC family transcriptional regulator | -1.1 | Yes |
| 4-Hydroxyphenylpropionic acid | Atu4547 | 3-oxoadipate CoA-transferase subunit A | -1.8 | |
| 4-Hydroxyphenylpropionic acid | Atu4548 | 3-oxoadipate CoA-transferase subunit B | -1.8 | |
| 4-Hydroxyphenylpropionic acid | Atu4549 | beta-ketoadipyl CoA thiolase | -1.7 | |
| 4-Hydroxyphenylpropionic acid | Atu4824 | IclR family transcriptional regulator | +1.1 | |
| Adipic acid | Atu0626 | alcohol dehydrogenase | -1.7 | |
| Adipic acid | Atu0663 | hypothetical protein | -2.0 | |
| Adipic acid | Atu0664 | transcriptional regulator, LysR family | -1.7 | |
| Adipic acid | Atu2224 | aldehyde dehydrogenase | -2.6 | |
| Asolectin from soybean | Atu1437 | hypothetical protein | -2.7 | |
| Asolectin from soybean | Atu1438 | transcriptional regulator, AraC family | -2.9 | |
| Beta-Lactose | Atu1113 | dehydrogenase | -2.4 | |
| Beta-Lactose | Atu3147 | oxidoreductase | -4.4 | |
| Beta-Lactose | Atu3148 | sugar ABC transporter ATPase | -4.7 | Yes |
| Beta-Lactose | Atu3149 | sugar ABC transporter permease | -4.1 | |
| Beta-Lactose | Atu3150 | sugar ABC transporter permease | -4.4 | Yes |
| Beta-Lactose | Atu3151 | sugar ABC transporter substrate-binding protein | -4.8 | Yes |
| Beta-Lactose | Atu3152 | AraC family transcriptional regulator | -4.4 | |
| Beta-Lactose | Atu3347 | hypothetical protein | -3.7 | |
| Beta-Lactose | Atu3348 | hypothetical protein | -4.2 | |
| Beta-Lactose | Atu3349 | ABC transporter permease | -1.5 | |
| Beta-Lactose | Atu3350 | ABC transporter permease | -1.6 | |
| Beta-Lactose | Atu3351 | sugar ABC transporter permease | -1.5 | |
| Beta-Lactose | Atu3352 | sugar ABC transporter substrate-binding protein | -1.5 | |
| Beta-Lactose | Atu4485 | beta-glucosidase | -1.1 | Yes |
| Beta-Lactose | Atu4665 | alpha-galactosidase | -1.3 | |
| Beta-alanine | Atu0207 | transcriptional regulator, LysR family | -1.9 | |
| Beta-alanine | Atu0626 | alcohol dehydrogenase | -1.6 | |
| Beta-alanine | Atu0663 | hypothetical protein | -1.3 | |
| Beta-alanine | Atu0664 | transcriptional regulator, LysR family | -1.5 | |
| Beta-alanine | Atu1577 | ABC transporter, substrate binding protein (amino acid) | -1.4 | |
| Beta-alanine | Atu1579 | ABC transporter, membrane spanning protein (amino acid) | -1.4 | |
| Beta-alanine | Atu2224 | aldehyde dehydrogenase | -2.0 | |
| Beta-alanine | Atu2427 | ABC transporter, membrane spanning protein | -1.1 | Yes |
| Beta-alanine | Atu3291 | Lpr family transcriptional regulator | -4.1 | |
| Beta-alanine | Atu3292 | alanine racemase | -3.0 | |
| Beta-alanine | Atu3293 | D-amino acid dehydrogenase small subunit | -3.7 | Yes |
| Beta-alanine | Atu3328 | aldehyde dehydrogenase | -3.3 | |
| Beta-alanine | Atu3329 | beta alanine--pyruvate transaminase | -3.3 | Yes |
| Beta-alanine | Atu4702 | GntR family transcriptional regulator | -1.9 | |
| Beta-alanine | Atu4824 | IclR family transcriptional regulator | -1.8 | |
| Beta-alanine | Atu4825 | dehydrogenase | -1.5 | |
| Beta-alanine | Atu5007 | santhopine-responsive transcriptional repressor | -1.2 | |
| Betanin | Atu3020 | GntR family transcriptional regulator | +1.4 | |
| Betanin | Atu3021 | sugar ABC transporter ATPase | +1.5 | |
| Betanin | Atu3022 | sugar ABC transporter permease | +1.3 | |
| Betanin | Atu3023 | sugar ABC transporter permease | +1.4 | |
| Betanin | Atu3024 | sugar ABC transporter permease | +1.3 | |
| Betanin | Atu3025 | oligo alginate lyase | +1.2 | |
| Betanin | Atu3026 | short chain dehydrogenase | +1.4 | |
| Betanin | Atu3027 | dehydrogenase | +1.2 | |
| Betanin | Atu3029 | glucarate dehydratase | +1.2 | |
| Betanin | Atu4862 | IS21 family transposase | +1.0 | |
| Betanin | Atu4864 | MarR family transcriptional regulator | +1.3 | |
| Betanin | Atu4867 | hypothetical protein | +1.1 | |
| Betanin | Atu4870 | NADP-dependent quinone oxidoreductase | +1.2 | |
| Betanin | Atu4872 | LysR family transcriptional regulator | +1.2 | |
| Betanin | Atu4874 | hypothetical protein | +1.1 | |
| Betanin | Atu4877 | short-chain dehydrogenase | +1.3 | |
| Betanin | Atu4878 | hypothetical protein | +1.3 | |
| Betanin | Atu4879 | hypothetical protein | +1.6 | |
| Betanin | Atu4880 | AraC family transcriptional regulator | +1.4 | |
| Betanin | Atu4881 | hypothetical protein | +1.5 | |
| Cellohexaose | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -1.7 | |
| Cellohexaose | Atu4369 | sugar ABC transporter substrate-binding protein | -1.8 | |
| Cellohexaose | Atu4370 | sugar ABC transporter ATPase | -1.9 | |
| Cellohexaose | Atu4371 | sugar ABC transporter permease | -2.2 | |
| Cellohexaose | Atu4372 | ribose ABC transporter permease | -2.1 | |
| Cellohexaose | Atu4373 | LacI family transcriptional regulator | -1.4 | |
| Cellohexaose | Atu4374 | hypothetical protein | -1.4 | |
| Cellohexaose | Atu4375 | hypothetical protein | -1.9 | |
| Cellopentaose | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -1.3 | |
| Cellopentaose | Atu4369 | sugar ABC transporter substrate-binding protein | -1.7 | |
| Cellopentaose | Atu4370 | sugar ABC transporter ATPase | -1.5 | |
| Cellopentaose | Atu4371 | sugar ABC transporter permease | -1.7 | |
| Cellopentaose | Atu4372 | ribose ABC transporter permease | -1.6 | |
| Cellopentaose | Atu4374 | hypothetical protein | -1.4 | |
| Cellopentaose | Atu4375 | hypothetical protein | -1.3 | |
| Cellotetraose | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -2.1 | |
| Cellotetraose | Atu4369 | sugar ABC transporter substrate-binding protein | -1.4 | |
| Cellotetraose | Atu4370 | sugar ABC transporter ATPase | -1.5 | |
| Cellotetraose | Atu4371 | sugar ABC transporter permease | -1.5 | |
| Cellotetraose | Atu4372 | ribose ABC transporter permease | -1.6 | |
| Cellotetraose | Atu4373 | LacI family transcriptional regulator | -1.8 | |
| Cellotetraose | Atu4374 | hypothetical protein | -2.0 | |
| Cellotetraose | Atu4375 | hypothetical protein | -2.5 | |
| D,L-Malic Acid | Atu3296 | two component response regulator for C4-dicarboxylate transport | -1.7 | |
| D,L-Malic Acid | Atu3297 | two component sensor kinase for C4-dicarboxylate transport | -1.7 | |
| D,L-Malic Acid | Atu3298 | C4-dicarboxylate transporter DctA | -1.8 | Yes |
| D-(+)-Turanose | Atu1572 | hydrolase | -1.6 | |
| D-(+)-Turanose | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -1.2 | |
| D-(+)-Turanose | Atu3339 | trehalose/maltose ABC transporter permease | -1.3 | |
| D-(+)-Turanose | Atu3340 | trehalose/maltose ABC transporter permease | -1.2 | |
| D-(+)-Turanose | Atu3341 | trehalose/maltose ABC transporter ATPase | -1.1 | |
| D-(+)-Turanose | Atu3342 | trehalose utilization-like protein | -2.1 | |
| D-(+)-Turanose | Atu3343 | trehalose utilization-like protein | -2.1 | |
| D-(+)-melezitose monohydrate | Atu0591 | ABC transporter, substrate binding protein (alpha-glucoside) | +2.5 | |
| D-(+)-melezitose monohydrate | Atu0592 | ABC transporter, membrane spanning protein | +3.4 | |
| D-(+)-melezitose monohydrate | Atu0593 | ABC transporter, membrane spanning protein | +4.0 | |
| D-(+)-melezitose monohydrate | Atu0594 | alpha-glucosidase | +2.1 | |
| D-(+)-melezitose monohydrate | Atu0626 | alcohol dehydrogenase | -1.1 | |
| D-(+)-melezitose monohydrate | Atu2224 | aldehyde dehydrogenase | -1.9 | |
| D-(+)-melezitose monohydrate | Atu3342 | trehalose utilization-like protein | -3.5 | |
| D-(+)-melezitose monohydrate | Atu3343 | trehalose utilization-like protein | -4.1 | |
| D-(-)-lyxose | Atu0770 | cytochrome C oxidase assembly protein | -1.4 | |
| D-(-)-lyxose | Atu0771 | cytochrome c oxidase subunit III | -1.4 | |
| D-(-)-lyxose | Atu2156 | hypothetical protein | -3.9 | |
| D-(-)-lyxose | Atu3878 | transcriptional regulator | -1.6 | |
| D-(-)-lyxose | Atu4029 | gluconolactonase | -1.3 | |
| D-(-)-lyxose | Atu4364 | LacI family transcriptional regulator | -2.0 | |
| D-(-)-lyxose | Atu4448 | sorbitol/mannitol ABC transporter permease | -1.1 | |
| D-(-)-lyxose | Atu4449 | sorbitol/mannitol ABC transporter permease | -1.1 | |
| D-(-)-lyxose | Atu4451 | mannitol 2-dehydrogenase | -3.0 | |
| D-(-)-lyxose | Atu4465 | transcriptional regulator | +1.5 | |
| D-(-)-lyxose | Atu4481 | LacI family transcriptional regulator | -2.1 | |
| D-(-)-lyxose | Atu4482 | xylulokinase | -7.3 | |
| D-(-)-lyxose | Atu4483 | xylose isomerase | -1.8 | |
| D-Arabinose | Atu0014 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | -4.0 | Yes |
| D-Arabinose | Atu2022 | NADP-dependent alcohol dehydrogenase | -1.4 | |
| D-Arabinose | Atu2741 | hypothetical protein | -1.5 | Yes |
| D-Arabinose | Atu2815 | hypothetical protein | -2.5 | |
| D-Arabinose | Atu2816 | oxidoreductase | -3.1 | |
| D-Arabinose | Atu2817 | ABC transporter, substrate binding protein (ribose) | -2.4 | |
| D-Arabinose | Atu2818 | ABC transporter, membrane spanning protein (ribose) | -2.2 | |
| D-Arabinose | Atu2819 | ABC transporter, nucleotide binding/ATPase protein (ribose) | -2.5 | |
| D-Arabinose | Atu2822 | D-galactarate dehydratase | -3.4 | |
| D-Arabinose | Atu3815 | GntR family transcriptional regulator | +1.8 | |
| D-Arabinose | Atu4448 | sorbitol/mannitol ABC transporter permease | -1.3 | Yes |
| D-Arabinose | Atu4451 | mannitol 2-dehydrogenase | -2.4 | |
| D-Arabinose | Atu4482 | xylulokinase | -1.5 | Yes |
| D-Cellobiose | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -1.9 | |
| D-Cellobiose | Atu1572 | hydrolase | -2.2 | |
| D-Fructose | Atu0063 | ABC transporter, substrate binding protein (sugar) | -7.6 | Yes |
| D-Fructose | Atu0064 | ABC transporter, membrane spanning protein (sugar) | -5.6 | Yes |
| D-Fructose | Atu0065 | ABC transporter, nucleotide binding/ATPase protein (sugar) | -5.8 | |
| D-Galactose | Atu0704 | 2-dehydro-3-deoxygalactonate kinase | -4.6 | Yes |
| D-Galactose | Atu0705 | 3-oxoacyl-(acyl carrier protein) reductase | -4.3 | Yes |
| D-Galactose | Atu1113 | dehydrogenase | -3.7 | Yes |
| D-Galactose | Atu1572 | hydrolase | -1.9 | |
| D-Galacturonic Acid monohydrate | Atu0535 | hypothetical protein | -1.9 | |
| D-Galacturonic Acid monohydrate | Atu0546 | flagellar biosynthetic protein | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0548 | flagellar L-ring protein precursor | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0554 | flagellar basal-body rod protein | +1.3 | |
| D-Galacturonic Acid monohydrate | Atu0558 | flagellar basal body rod protein | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0559 | hypothetical protein | +1.2 | |
| D-Galacturonic Acid monohydrate | Atu0563 | flagellar motor switch protein FliG | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0564 | flagellar biosynthetic protein | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0568 | hypothetical protein | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0579 | hook formation protein | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0582 | flagellar biosynthetic protein FLIR | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu0584 | hypothetical protein | +1.2 | |
| D-Galacturonic Acid monohydrate | Atu0663 | hypothetical protein | -1.7 | |
| D-Galacturonic Acid monohydrate | Atu0770 | cytochrome C oxidase assembly protein | -2.8 | |
| D-Galacturonic Acid monohydrate | Atu0771 | cytochrome c oxidase subunit III | -2.3 | |
| D-Galacturonic Acid monohydrate | Atu0981 | glutamate-ammonia-ligase adenylyltransferase | -2.8 | |
| D-Galacturonic Acid monohydrate | Atu1285 | metal dependent hydrolase | -1.8 | |
| D-Galacturonic Acid monohydrate | Atu1770 | glutamine synthetase | -1.8 | |
| D-Galacturonic Acid monohydrate | Atu1888 | two component sensor kinase | +1.5 | |
| D-Galacturonic Acid monohydrate | Atu2035 | acetolactate synthase, small subunit | -3.2 | |
| D-Galacturonic Acid monohydrate | Atu2131 | hypothetical protein | -1.2 | |
| D-Galacturonic Acid monohydrate | Atu2145 | transcriptional regulator, RpiR family | -1.0 | |
| D-Galacturonic Acid monohydrate | Atu3075 | TetR family transcriptional regulator | -1.3 | |
| D-Galacturonic Acid monohydrate | Atu3115 | TetR family transcriptional regulator | +2.6 | |
| D-Galacturonic Acid monohydrate | Atu3128 | di-trans,poly-cis-decaprenylcistransferase | +1.2 | |
| D-Galacturonic Acid monohydrate | Atu3135 | ABC transporter permease | -5.0 | Yes |
| D-Galacturonic Acid monohydrate | Atu3136 | ABC transporter permease | -4.9 | Yes |
| D-Galacturonic Acid monohydrate | Atu3137 | C4-dicarboxylate-binding protein | -5.0 | Yes |
| D-Galacturonic Acid monohydrate | Atu3138 | hypothetical protein | -7.2 | |
| D-Galacturonic Acid monohydrate | Atu3139 | hypothetical protein | -7.0 | |
| D-Galacturonic Acid monohydrate | Atu3140 | 5-dehydro-4-deoxyglucarate dehydratase | -6.2 | Yes |
| D-Galacturonic Acid monohydrate | Atu3141 | 2-deoxy-D-gluconate 3-dehydrogenase | -1.9 | |
| D-Galacturonic Acid monohydrate | Atu3142 | 5-keto-4-deoxyuronate isomerase | -2.0 | |
| D-Galacturonic Acid monohydrate | Atu3143 | hypothetical protein | -5.5 | Yes |
| D-Galacturonic Acid monohydrate | Atu3144 | GntR family transcriptional regulator | +2.4 | |
| D-Galacturonic Acid monohydrate | Atu3147 | oxidoreductase | -1.6 | |
| D-Galacturonic Acid monohydrate | Atu3280 | GntR family transcriptional regulator | -1.3 | |
| D-Galacturonic Acid monohydrate | Atu3342 | trehalose utilization-like protein | -2.5 | |
| D-Galacturonic Acid monohydrate | Atu3343 | trehalose utilization-like protein | -3.0 | |
| D-Galacturonic Acid monohydrate | Atu3356 | malic enzyme | -1.7 | |
| D-Galacturonic Acid monohydrate | Atu3453 | isomerase/lactonizing enzyme | -1.7 | |
| D-Galacturonic Acid monohydrate | Atu3577 | transcriptional regulator | -1.0 | |
| D-Galacturonic Acid monohydrate | Atu3878 | transcriptional regulator | -1.2 | |
| D-Galacturonic Acid monohydrate | Atu3912 | hypothetical protein | -2.2 | |
| D-Galacturonic Acid monohydrate | Atu3913 | biotin carboxylase | -1.7 | |
| D-Galacturonic Acid monohydrate | Atu3971 | dihydroxy-acid dehydratase | -1.8 | |
| D-Galacturonic Acid monohydrate | Atu4033 | sugar ABC transporter substrate-binding protein | +1.2 | |
| D-Galacturonic Acid monohydrate | Atu4034 | two component sensor kinase | +1.1 | |
| D-Galacturonic Acid monohydrate | Atu4035 | two component response regulator | +1.2 | |
| D-Galacturonic Acid monohydrate | Atu4077 | glycogen branching protein | -1.5 | |
| D-Galacturonic Acid monohydrate | Atu4190 | calcium-binding protein, regucalcin | +2.0 | Yes |
| D-Galacturonic Acid monohydrate | Atu4191 | GntR family transcriptional regulator | +2.8 | |
| D-Galacturonic Acid monohydrate | Atu4192 | oligopeptide ABC transporter substrate-binding protein | -1.5 | |
| D-Galacturonic Acid monohydrate | Atu4193 | oligopeptide ABC transporter permease | -1.6 | |
| D-Galacturonic Acid monohydrate | Atu4194 | oligopeptide ABC transporter permease | -2.0 | |
| D-Galacturonic Acid monohydrate | Atu4195 | oligopeptide ABC transporter ATPase | -1.7 | |
| D-Galacturonic Acid monohydrate | Atu4364 | LacI family transcriptional regulator | -3.5 | |
| D-Galacturonic Acid monohydrate | Atu4451 | mannitol 2-dehydrogenase | -2.2 | |
| D-Galacturonic Acid monohydrate | Atu4530 | TetR family transcriptional regulator | +3.4 | |
| D-Galacturonic Acid monohydrate | Atu4532 | shikimate 5-dehydrogenase | +1.4 | |
| D-Galacturonic Acid monohydrate | Atu4599 | IclR family transcriptional regulator | -1.8 | |
| D-Galacturonic Acid monohydrate | Atu4743 | LacI family transcriptional regulator | -2.6 | |
| D-Galacturonic Acid monohydrate | Atu4824 | IclR family transcriptional regulator | -1.8 | |
| D-Galacturonic Acid monohydrate | Atu4825 | dehydrogenase | -1.6 | |
| D-Galacturonic Acid monohydrate | Atu5075 | GntR family transcriptional regulator | -1.7 | |
| D-Galacturonic Acid monohydrate | Atu8132 | hypothetical protein | +1.5 | |
| D-Gluconic Acid sodium salt | Atu0015 | intracellular PHB depolymerase | +1.7 | |
| D-Gluconic Acid sodium salt | Atu0195 | gluconokinase | +2.9 | Yes |
| D-Gluconic Acid sodium salt | Atu1522 | transcriptional regulator, LacI family | +1.5 | |
| D-Gluconic Acid sodium salt | Atu2296 | 2-dehydro-3-deoxygluconokinase | +3.2 | |
| D-Gluconic Acid sodium salt | Atu2708 | MFS permease | -3.8 | |
| D-Gluconic Acid sodium salt | Atu2740 | transcriptional regulator, GntR family | +9.9 | |
| D-Gluconic Acid sodium salt | Atu2768 | hypothetical protein | +8.8 | |
| D-Glucosamine Hydrochloride | Atu0790 | hypothetical protein | -6.6 | Yes |
| D-Glucosamine Hydrochloride | Atu2350 | transcriptional regulator, LysR family | +1.3 | |
| D-Glucosamine Hydrochloride | Atu2598 | transcriptional regulator, RpiR family | +1.2 | |
| D-Glucosamine Hydrochloride | Atu2606 | transcriptional regulator, GntR family | -6.9 | Yes |
| D-Glucosamine Hydrochloride | Atu2607 | glucosamine--fructose-6-phosphate aminotransferase | -6.0 | Yes |
| D-Glucosamine Hydrochloride | Atu2609 | transcriptional regulator, ROK family | -5.3 | |
| D-Glucosamine Hydrochloride | Atu3343 | trehalose utilization-like protein | +1.8 | |
| D-Glucosamine Hydrochloride | Atu3574 | xylose ABC transporter ATPase | -1.8 | |
| D-Glucosamine Hydrochloride | Atu3575 | xylose ABC transporter permease | -1.6 | |
| D-Glucosamine Hydrochloride | Atu3576 | xylose ABC transporter substrate-binding protein | -2.0 | |
| D-Glucosamine Hydrochloride | Atu3577 | transcriptional regulator | +1.3 | |
| D-Glucosamine Hydrochloride | Atu4702 | GntR family transcriptional regulator | -1.6 | |
| D-Glucose | Atu2045 | HFLK protein | variable | |
| D-Glucose | Atu2348 | sugar binding protein | -2.0 | |
| D-Glucose | Atu3574 | xylose ABC transporter ATPase | -1.4 | |
| D-Glucose | Atu3575 | xylose ABC transporter permease | -1.4 | Yes |
| D-Glucose | Atu3576 | xylose ABC transporter substrate-binding protein | -1.5 | Yes |
| D-Glucose-6-Phosphate sodium salt | Atu1572 | hydrolase | -1.5 | |
| D-Glucose-6-Phosphate sodium salt | Atu4781 | two component sensor kinase | -5.8 | |
| D-Glucose-6-Phosphate sodium salt | Atu4782 | two component response regulator | -8.1 | |
| D-Glucose-6-Phosphate sodium salt | Atu4783 | ABC transporter substrate-binding protein | -5.3 | |
| D-Glucose-6-Phosphate sodium salt | Atu4784 | ABC transporter substrate-binding protein | -5.8 | |
| D-Glucose-6-Phosphate sodium salt | Atu4785 | iron ABC transporter permease | -6.1 | |
| D-Glucose-6-Phosphate sodium salt | Atu4786 | iron ABC transporter ATPase | -6.1 | |
| D-Glucuronic acid gamma lactone | Atu2428 | exopolysaccharide production protein PssB | -1.2 | |
| D-Glucuronic acid gamma lactone | Atu3259 | dehydrogenase | -2.3 | |
| D-Glucuronic acid gamma lactone | Atu3497 | hypothetical protein | -1.4 | |
| D-Glucuronic acid gamma lactone | Atu3498 | aldehyde dehydrogenase | -2.1 | |
| D-Glucuronic acid gamma lactone | Atu3964 | dehydrogenase | -4.1 | |
| D-Glucuronic acid gamma lactone | Atu3965 | oxidoreductase | -4.1 | |
| D-Glucuronic acid gamma lactone | Atu3966 | oxidoreductase | -4.8 | |
| D-Glucuronic acid gamma lactone | Atu3967 | sugar ABC transporter substrate-binding protein | -5.3 | |
| D-Glucuronic acid gamma lactone | Atu3968 | sugar ABC transporter permease | -5.4 | |
| D-Glucuronic acid gamma lactone | Atu3969 | sugar ABC transporter permease | -5.1 | |
| D-Glucuronic acid gamma lactone | Atu3970 | sugar ABC transporter ATPase | -5.2 | |
| D-Glucuronic acid gamma lactone | Atu3971 | dihydroxy-acid dehydratase | -7.1 | |
| D-Glucuronic acid gamma lactone | Atu3972 | hypothetical protein | -5.7 | |
| D-Glucuronic acid gamma lactone | Atu3973 | hypothetical protein | -6.4 | |
| D-Glucuronic acid gamma lactone | Atu4029 | gluconolactonase | -2.3 | |
| D-Glucuronic acid gamma lactone | Atu4030 | sugar ABC transporter permease | -1.4 | |
| D-Glucuronic acid gamma lactone | Atu4031 | sugar ABC transporter permease | -1.7 | |
| D-Glucuronic acid gamma lactone | Atu4032 | sugar ABC transporter ATPase | -1.7 | |
| D-Glucuronic acid gamma lactone | Atu4033 | sugar ABC transporter substrate-binding protein | -1.4 | |
| D-Glucuronic acid gamma lactone | Atu4034 | two component sensor kinase | -1.4 | |
| D-Glucuronic acid gamma lactone | Atu4035 | two component response regulator | -1.2 | |
| D-Leucrose | Atu0535 | hypothetical protein | variable | |
| D-Leucrose | Atu0591 | ABC transporter, substrate binding protein (alpha-glucoside) | -2.1 | |
| D-Leucrose | Atu0592 | ABC transporter, membrane spanning protein | -2.1 | |
| D-Leucrose | Atu0593 | ABC transporter, membrane spanning protein | -1.6 | |
| D-Leucrose | Atu0595 | ABC transporter, nucleotide binding/ATPase protein | -1.7 | |
| D-Leucrose | Atu1522 | transcriptional regulator, LacI family | +4.2 | |
| D-Leucrose | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -5.4 | Yes |
| D-Leucrose | Atu3339 | trehalose/maltose ABC transporter permease | -5.3 | Yes |
| D-Leucrose | Atu3340 | trehalose/maltose ABC transporter permease | -5.0 | Yes |
| D-Leucrose | Atu3341 | trehalose/maltose ABC transporter ATPase | -3.9 | Yes |
| D-Leucrose | Atu3342 | trehalose utilization-like protein | -5.6 | |
| D-Leucrose | Atu3343 | trehalose utilization-like protein | -6.9 | Yes |
| D-Leucrose | Atu4364 | LacI family transcriptional regulator | +1.4 | |
| D-Maltose monohydrate | Atu1572 | hydrolase | -2.4 | |
| D-Maltose monohydrate | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -1.2 | |
| D-Maltose monohydrate | Atu3339 | trehalose/maltose ABC transporter permease | -1.1 | |
| D-Maltose monohydrate | Atu3340 | trehalose/maltose ABC transporter permease | -1.0 | |
| D-Mannitol | Atu4447 | sorbitol ABC transporter substrate-binding protein | -4.9 | Yes |
| D-Mannitol | Atu4448 | sorbitol/mannitol ABC transporter permease | -4.3 | |
| D-Mannitol | Atu4449 | sorbitol/mannitol ABC transporter permease | -4.4 | Yes |
| D-Mannitol | Atu4450 | sugar ABC transporter ATPase | -4.8 | |
| D-Mannitol | Atu4451 | mannitol 2-dehydrogenase | -8.2 | Yes |
| D-Mannitol | Atu4453 | ribitol kinase | -2.1 | Yes |
| D-Mannose | Atu2045 | HFLK protein | -1.5 | |
| D-Mannose | Atu2156 | hypothetical protein | -6.8 | Yes |
| D-Raffinose pentahydrate | Atu0704 | 2-dehydro-3-deoxygalactonate kinase | -2.0 | |
| D-Raffinose pentahydrate | Atu4659 | AraC family transcriptional regulator | -5.6 | Yes |
| D-Raffinose pentahydrate | Atu4660 | alpha-galactosidase | -5.8 | Yes |
| D-Raffinose pentahydrate | Atu4661 | alpha-galactoside ABC transporter substrate-binding protein | -5.4 | Yes |
| D-Raffinose pentahydrate | Atu4662 | oligopeptide ABC transporter permease | -5.8 | Yes |
| D-Raffinose pentahydrate | Atu4663 | oligopeptide ABC transporter permease | -6.7 | Yes |
| D-Raffinose pentahydrate | Atu4664 | oligopeptide ABC transporter ATPase | -5.4 | Yes |
| D-Raffinose pentahydrate | Atu4665 | alpha-galactosidase | -6.4 | Yes |
| D-Ribose | Atu0364 | ribokinase | -3.0 | Yes |
| D-Ribose | Atu2822 | D-galactarate dehydratase | +2.8 | |
| D-Ribose | Atu3532 | GntR family transcriptional regulator | +2.2 | |
| D-Ribose | Atu3815 | GntR family transcriptional regulator | +1.3 | |
| D-Ribose | Atu4031 | sugar ABC transporter permease | -1.0 | |
| D-Ribose | Atu4702 | GntR family transcriptional regulator | -1.5 | |
| D-Ribose | Atu4743 | LacI family transcriptional regulator | +5.3 | Yes |
| D-Ribose | Atu4841 | DeoR family transcriptional regulator | +4.9 | |
| D-Saccharic acid potassium salt | Atu0300 | methyltransferase | +1.9 | |
| D-Saccharic acid potassium salt | Atu0771 | cytochrome c oxidase subunit III | -2.3 | |
| D-Saccharic acid potassium salt | Atu0981 | glutamate-ammonia-ligase adenylyltransferase | -1.6 | |
| D-Saccharic acid potassium salt | Atu1300 | MFS permease | +1.2 | |
| D-Saccharic acid potassium salt | Atu1444 | nitrogen regulation protein | +2.4 | |
| D-Saccharic acid potassium salt | Atu1564 | hypothetical protein | -1.2 | |
| D-Saccharic acid potassium salt | Atu1578 | ABC transporter, membrane spanning protein (amino acid) | -3.6 | |
| D-Saccharic acid potassium salt | Atu1579 | ABC transporter, membrane spanning protein (amino acid) | -2.7 | |
| D-Saccharic acid potassium salt | Atu1580 | ABC transporter, nucleotide binding/ATPase protein (amino acid) | -4.7 | |
| D-Saccharic acid potassium salt | Atu1592 | hypothetical protein | -2.3 | |
| D-Saccharic acid potassium salt | Atu1770 | glutamine synthetase | -1.6 | |
| D-Saccharic acid potassium salt | Atu1848 | transcriptional regulator, GntR family | -2.9 | |
| D-Saccharic acid potassium salt | Atu1876 | hypothetical protein | -1.5 | |
| D-Saccharic acid potassium salt | Atu2511 | D-alanine aminotransferase | -1.7 | |
| D-Saccharic acid potassium salt | Atu2753 | ATP-dependent helicase | +2.9 | |
| D-Saccharic acid potassium salt | Atu2768 | hypothetical protein | +2.4 | |
| D-Saccharic acid potassium salt | Atu3140 | 5-dehydro-4-deoxyglucarate dehydratase | +4.0 | |
| D-Saccharic acid potassium salt | Atu3226 | GntR family transcriptional regulator | -1.7 | |
| D-Saccharic acid potassium salt | Atu3240 | ROK family transcriptional regulator | -1.8 | |
| D-Saccharic acid potassium salt | Atu3259 | dehydrogenase | -1.3 | |
| D-Saccharic acid potassium salt | Atu3461 | GntR family transcriptional regulator | +7.9 | |
| D-Saccharic acid potassium salt | Atu3505 | 3-hydroxyisobutyryl-CoA hydrolase | -2.4 | |
| D-Saccharic acid potassium salt | Atu3577 | transcriptional regulator | -1.9 | |
| D-Saccharic acid potassium salt | Atu3791 | L-asparaginase | +1.6 | |
| D-Saccharic acid potassium salt | Atu3792 | L-asparagine permease | +2.9 | |
| D-Saccharic acid potassium salt | Atu3799 | GntR family transcriptional regulator | -2.2 | |
| D-Saccharic acid potassium salt | Atu3878 | transcriptional regulator | -1.7 | |
| D-Saccharic acid potassium salt | Atu3965 | oxidoreductase | -2.5 | |
| D-Saccharic acid potassium salt | Atu3966 | oxidoreductase | -2.9 | |
| D-Saccharic acid potassium salt | Atu3967 | sugar ABC transporter substrate-binding protein | -4.6 | |
| D-Saccharic acid potassium salt | Atu3968 | sugar ABC transporter permease | -3.8 | |
| D-Saccharic acid potassium salt | Atu3970 | sugar ABC transporter ATPase | -3.9 | |
| D-Saccharic acid potassium salt | Atu3971 | dihydroxy-acid dehydratase | -4.3 | |
| D-Saccharic acid potassium salt | Atu4128 | GMC type oxidoreductase | -3.1 | |
| D-Saccharic acid potassium salt | Atu4162 | two-component response regulator | +1.5 | |
| D-Saccharic acid potassium salt | Atu4364 | LacI family transcriptional regulator | -2.3 | |
| D-Saccharic acid potassium salt | Atu4530 | TetR family transcriptional regulator | +2.5 | |
| D-Saccharic acid potassium salt | Atu4576 | ROK family transcriptional regulator | -2.0 | |
| D-Saccharic acid potassium salt | Atu4624 | GntR family transcriptional regulator | +3.0 | |
| D-Saccharic acid potassium salt | Atu4655 | ROK family transcriptional regulator | -1.2 | |
| D-Saccharic acid potassium salt | Atu4702 | GntR family transcriptional regulator | -1.8 | |
| D-Saccharic acid potassium salt | Atu4824 | IclR family transcriptional regulator | -2.6 | |
| D-Saccharic acid potassium salt | Atu4841 | DeoR family transcriptional regulator | -1.4 | |
| D-Sorbitol | Atu3166 | fructokinase | +3.8 | |
| D-Sorbitol | Atu4099 | hypothetical protein | +1.6 | |
| D-Sorbitol | Atu4296 | dehydrogenase | -1.7 | |
| D-Sorbitol | Atu4297 | AraC family transcriptional regulator | -1.8 | |
| D-Sorbitol | Atu4318 | xylitol dehydrogenase | -3.1 | Yes |
| D-Sorbitol | Atu4447 | sorbitol ABC transporter substrate-binding protein | +2.9 | Yes |
| D-Sorbitol | Atu4448 | sorbitol/mannitol ABC transporter permease | +2.4 | Yes |
| D-Sorbitol | Atu4449 | sorbitol/mannitol ABC transporter permease | +2.6 | Yes |
| D-Sorbitol | Atu4450 | sugar ABC transporter ATPase | +2.4 | |
| D-Sorbitol | Atu4451 | mannitol 2-dehydrogenase | -1.7 | Yes |
| D-Sorbitol | Atu4452 | hypothetical protein | +1.3 | |
| D-Sorbitol | Atu4453 | ribitol kinase | +3.1 | Yes |
| D-Sorbitol | Atu4743 | LacI family transcriptional regulator | +3.7 | |
| D-Trehalose dihydrate | Atu0591 | ABC transporter, substrate binding protein (alpha-glucoside) | -3.8 | |
| D-Trehalose dihydrate | Atu0592 | ABC transporter, membrane spanning protein | -4.2 | |
| D-Trehalose dihydrate | Atu0593 | ABC transporter, membrane spanning protein | -3.7 | |
| D-Trehalose dihydrate | Atu0594 | alpha-glucosidase | -2.8 | Yes |
| D-Trehalose dihydrate | Atu0595 | ABC transporter, nucleotide binding/ATPase protein | -3.8 | |
| D-Trehalose dihydrate | Atu1572 | hydrolase | -1.7 | |
| D-Xylose | Atu4481 | LacI family transcriptional regulator | -2.7 | Yes |
| D-Xylose | Atu4482 | xylulokinase | -3.4 | Yes |
| D-Xylose | Atu4483 | xylose isomerase | -3.4 | Yes |
| D-glutamine | Atu2766 | NAD-glutamate dehydrogenase | -2.0 | |
| D-glutamine | Atu3243 | hypothetical protein | -3.5 | |
| D-glutamine | Atu3293 | D-amino acid dehydrogenase small subunit | -1.5 | |
| D-glutamine | Atu3909 | hypothetical protein | -2.2 | |
| D-glutamine | Atu3911 | hypothetical protein | -2.4 | |
| D-glutamine | Atu3912 | hypothetical protein | -2.3 | |
| D-glutamine | Atu3913 | biotin carboxylase | -2.2 | |
| DL-glyceraldehyde | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -2.1 | |
| DL-glyceraldehyde | Atu2493 | NAD(P)+ transhydrogenase | -2.3 | |
| DL-glyceraldehyde | Atu2494 | NAD(P)+ transhydrogenase beta chain | -2.6 | |
| DL-glyceraldehyde | Atu3623 | DnaJ family molecular chaperone | -4.1 | |
| DL-glyceraldehyde | Atu3890 | glycerol kinase | -2.2 | |
| DL-glyceraldehyde | Atu4110 | serine dehydrogenase | -4.4 | |
| DL-glyceraldehyde | Atu4530 | TetR family transcriptional regulator | +2.7 | |
| Dihydroxyacetone | Atu0328 | heat-inducible transcription repressor | +1.4 | |
| Dihydroxyacetone | Atu0665 | glycolate oxidase subunit | -1.4 | |
| Dihydroxyacetone | Atu0666 | glycolate oxidase subunit | -1.2 | |
| Dihydroxyacetone | Atu0667 | glycolate oxidase iron-sulfur subunit | -1.2 | |
| Dihydroxyacetone | Atu2224 | aldehyde dehydrogenase | -1.4 | |
| Dihydroxyacetone | Atu3577 | transcriptional regulator | -1.0 | |
| Dihydroxyacetone | Atu3890 | glycerol kinase | -1.5 | |
| Dihydroxyacetone | Atu3898 | DeoR family transcriptional regulator | +3.1 | |
| Dihydroxyacetone | Atu4743 | LacI family transcriptional regulator | -2.8 | |
| Dihydroxyacetone | Atu4824 | IclR family transcriptional regulator | -1.2 | |
| Ethyl benzoate | Atu0405 | long-chain-fatty-acid-CoA-ligase | -2.6 | |
| Ethyl benzoate | Atu0591 | ABC transporter, substrate binding protein (alpha-glucoside) | +1.1 | |
| Ethyl benzoate | Atu0592 | ABC transporter, membrane spanning protein | +1.2 | |
| Ethyl benzoate | Atu0593 | ABC transporter, membrane spanning protein | +1.3 | |
| Ethyl benzoate | Atu0594 | alpha-glucosidase | +1.3 | |
| Ethyl benzoate | Atu0595 | ABC transporter, nucleotide binding/ATPase protein | +1.3 | |
| Ethyl benzoate | Atu0626 | alcohol dehydrogenase | -2.3 | |
| Ethyl benzoate | Atu0664 | transcriptional regulator, LysR family | -2.4 | |
| Ethyl benzoate | Atu1285 | metal dependent hydrolase | -1.8 | |
| Ethyl benzoate | Atu2224 | aldehyde dehydrogenase | -3.6 | |
| Ethyl benzoate | Atu2549 | transcriptional regulator, TetR family | -1.8 | |
| Ethyl benzoate | Atu3201 | TetR family transcriptional regulator | -2.7 | |
| Ethyl benzoate | Atu3202 | RND multidrug efflux transporter | +1.1 | |
| Ethyl benzoate | Atu3203 | RND multidrug efflux membrane permease | +1.2 | |
| Ethyl benzoate | Atu3798 | TetR family transcriptional regulator | -5.8 | |
| Ferulic Acid | Atu0300 | methyltransferase | -1.4 | |
| Ferulic Acid | Atu0770 | cytochrome C oxidase assembly protein | -1.4 | |
| Ferulic Acid | Atu0771 | cytochrome c oxidase subunit III | -1.4 | |
| Ferulic Acid | Atu0807 | metallo-beta-lactamase superfamily protein | -1.8 | |
| Ferulic Acid | Atu1418 | methylenetetrahydrofolate reductase | -1.7 | |
| Ferulic Acid | Atu1420 | glycine cleavage system T protein, aminomethyltransferase | -1.3 | |
| Ferulic Acid | Atu4226 | transcriptional regulator | +1.3 | |
| Ferulic Acid | Atu4538 | 3-carboxy-cis,cis-muconate cycloisomerase | -3.0 | |
| Ferulic Acid | Atu4539 | protocatechuate 3,4-dioxygenase alpha chain | -1.2 | Yes |
| Ferulic Acid | Atu4542 | beta-ketoadipate enol-lactone hydrolase | -2.0 | Yes |
| Ferulic Acid | Atu4547 | 3-oxoadipate CoA-transferase subunit A | -1.7 | |
| Ferulic Acid | Atu4548 | 3-oxoadipate CoA-transferase subunit B | -1.7 | Yes |
| Ferulic Acid | Atu4549 | beta-ketoadipyl CoA thiolase | -2.2 | Yes |
| Gentibiose | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -1.6 | |
| Gentibiose | Atu1572 | hydrolase | -1.5 | |
| Gentibiose | Atu1802 | lactoylglutathione lyase | -1.0 | |
| Gentibiose | Atu4373 | LacI family transcriptional regulator | -1.8 | |
| Gentibiose | Atu4374 | hypothetical protein | -2.1 | |
| Gentibiose | Atu4375 | hypothetical protein | -1.9 | |
| Glutaric acid | Atu0091 | MFS permease | -1.1 | |
| Glutaric acid | Atu0663 | hypothetical protein | -1.9 | |
| Glutaric acid | Atu0664 | transcriptional regulator, LysR family | -2.2 | |
| Glutaric acid | Atu1204 | potassium uptake protein | -1.5 | |
| Glutaric acid | Atu1449 | potassium uptake protein | -1.5 | |
| Glutaric acid | Atu2224 | aldehyde dehydrogenase | -1.6 | |
| Glutaric acid | Atu2769 | acetyl-CoA acetyltransferase; poly-beta-hydroxybutyrate biosynthesis | -4.7 | |
| Glutaric acid | Atu3597 | 3-hydroxybutyryl-CoA dehydrogenase | -2.5 | |
| Glutaric acid | Atu4419 | LysR family transcriptional regulator | -3.3 | |
| Glycerol | Atu1770 | glutamine synthetase | -1.2 | |
| Glycerol | Atu3890 | glycerol kinase | -1.2 | Yes |
| L-(+)-Erythrulose | Atu0626 | alcohol dehydrogenase | -1.4 | |
| L-(+)-Erythrulose | Atu0665 | glycolate oxidase subunit | -1.1 | |
| L-(+)-Erythrulose | Atu0931 | penicillin binding protein | +1.9 | |
| L-(+)-Erythrulose | Atu2035 | acetolactate synthase, small subunit | -1.0 | |
| L-(+)-Erythrulose | Atu2224 | aldehyde dehydrogenase | -2.3 | |
| L-(+)-Erythrulose | Atu2740 | transcriptional regulator, GntR family | -1.3 | |
| L-(+)-Erythrulose | Atu3780 | hypothetical protein | +1.5 | |
| L-(+)-Erythrulose | Atu3878 | transcriptional regulator | -1.6 | |
| L-(+)-Erythrulose | Atu3886 | lysophospholipase | +1.8 | |
| L-(+)-Erythrulose | Atu4743 | LacI family transcriptional regulator | -1.7 | |
| L-(-)-sorbose | Atu0063 | ABC transporter, substrate binding protein (sugar) | +2.2 | |
| L-(-)-sorbose | Atu0064 | ABC transporter, membrane spanning protein (sugar) | +1.6 | |
| L-(-)-sorbose | Atu0065 | ABC transporter, nucleotide binding/ATPase protein (sugar) | +1.6 | |
| L-(-)-sorbose | Atu0201 | hypothetical protein | +2.2 | |
| L-(-)-sorbose | Atu0300 | methyltransferase | -2.3 | |
| L-(-)-sorbose | Atu0328 | heat-inducible transcription repressor | +2.5 | |
| L-(-)-sorbose | Atu0405 | long-chain-fatty-acid-CoA-ligase | -1.9 | |
| L-(-)-sorbose | Atu0770 | cytochrome C oxidase assembly protein | -2.6 | |
| L-(-)-sorbose | Atu0771 | cytochrome c oxidase subunit III | -2.6 | |
| L-(-)-sorbose | Atu1494 | metal dependent hydrolase | +3.0 | |
| L-(-)-sorbose | Atu1518 | transcriptional regulator, Fur family | -2.2 | |
| L-(-)-sorbose | Atu1729 | putative molybdenum cofactor biosynthesis protein | +1.4 | |
| L-(-)-sorbose | Atu2131 | hypothetical protein | -1.5 | |
| L-(-)-sorbose | Atu2495 | flavoprotein oxidoreductase | -3.3 | |
| L-(-)-sorbose | Atu3232 | hydroxypyruvate reductase | -1.2 | |
| L-(-)-sorbose | Atu3280 | GntR family transcriptional regulator | -4.2 | |
| L-(-)-sorbose | Atu3532 | GntR family transcriptional regulator | +2.9 | |
| L-(-)-sorbose | Atu3577 | transcriptional regulator | -2.1 | |
| L-(-)-sorbose | Atu3624 | stress induced morphogen | -1.3 | |
| L-(-)-sorbose | Atu3815 | GntR family transcriptional regulator | -2.1 | |
| L-(-)-sorbose | Atu3898 | DeoR family transcriptional regulator | -2.7 | |
| L-(-)-sorbose | Atu4083 | aldose epimerase | -1.3 | |
| L-(-)-sorbose | Atu4099 | hypothetical protein | -2.9 | |
| L-(-)-sorbose | Atu4128 | GMC type oxidoreductase | -3.7 | |
| L-(-)-sorbose | Atu4295 | shikimate 5-dehydrogenase | -7.1 | |
| L-(-)-sorbose | Atu4296 | dehydrogenase | -6.6 | |
| L-(-)-sorbose | Atu4297 | AraC family transcriptional regulator | -6.2 | |
| L-(-)-sorbose | Atu4364 | LacI family transcriptional regulator | -1.8 | |
| L-(-)-sorbose | Atu4477 | TetR family transcriptional regulator | -1.4 | |
| L-(-)-sorbose | Atu4702 | GntR family transcriptional regulator | -2.0 | |
| L-(-)-sorbose | Atu4743 | LacI family transcriptional regulator | +4.1 | |
| L-Alanine | Atu0498 | hypothetical protein | -1.2 | |
| L-Alanine | Atu0981 | glutamate-ammonia-ligase adenylyltransferase | -1.5 | |
| L-Alanine | Atu1577 | ABC transporter, substrate binding protein (amino acid) | -2.2 | Yes |
| L-Alanine | Atu1578 | ABC transporter, membrane spanning protein (amino acid) | -2.3 | Yes |
| L-Alanine | Atu1579 | ABC transporter, membrane spanning protein (amino acid) | -2.2 | Yes |
| L-Alanine | Atu1580 | ABC transporter, nucleotide binding/ATPase protein (amino acid) | -2.4 | |
| L-Alanine | Atu2044 | HFLC protein | -1.5 | |
| L-Alanine | Atu3291 | Lpr family transcriptional regulator | -4.6 | Yes |
| L-Alanine | Atu3292 | alanine racemase | -4.3 | Yes |
| L-Alanine | Atu3293 | D-amino acid dehydrogenase small subunit | -4.4 | Yes |
| L-Alanine | Atu3791 | L-asparaginase | +1.9 | |
| L-Alanine | Atu4099 | hypothetical protein | -1.5 | |
| L-Alanine | Atu4128 | GMC type oxidoreductase | +1.2 | |
| L-Alanine | Atu4824 | IclR family transcriptional regulator | -1.2 | |
| L-Arabinose | Atu0663 | hypothetical protein | -1.6 | Yes |
| L-Arabinose | Atu1113 | dehydrogenase | -4.5 | |
| L-Arabinose | Atu1303 | exoribonuclease | -1.2 | |
| L-Arabinose | Atu2345 | hypothetical protein | -2.4 | Yes |
| L-Arabinose | Atu2348 | sugar binding protein | -1.6 | Yes |
| L-Arabinose | Atu3259 | dehydrogenase | -2.0 | Yes |
| L-Arabinose | Atu3815 | GntR family transcriptional regulator | -2.5 | |
| L-Fucose | Atu0014 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | -4.5 | Yes |
| L-Fucose | Atu0786 | peptidase, family M16 | +1.3 | |
| L-Fucose | Atu1217 | cysteine synthase | -1.5 | |
| L-Fucose | Atu1564 | hypothetical protein | -1.3 | Yes |
| L-Fucose | Atu2318 | L-lactate dehydrogenase | -1.4 | Yes |
| L-Fucose | Atu2504 | transcriptional regulator, GntR family | -1.3 | |
| L-Fucose | Atu2811 | hypothetical protein | -4.8 | Yes |
| L-Fucose | Atu2812 | hypothetical protein | -4.2 | Yes |
| L-Fucose | Atu2813 | altronate oxidoreductase | -4.0 | |
| L-Fucose | Atu2814 | zinc-binding dehydrogenase | -4.7 | |
| L-Fucose | Atu2815 | hypothetical protein | -3.0 | Yes |
| L-Fucose | Atu2816 | oxidoreductase | -2.2 | Yes |
| L-Fucose | Atu4030 | sugar ABC transporter permease | +1.3 | |
| L-Fucose | Atu4031 | sugar ABC transporter permease | +1.3 | |
| L-Fucose | Atu4032 | sugar ABC transporter ATPase | +1.5 | |
| L-Fucose | Atu4033 | sugar ABC transporter substrate-binding protein | +1.5 | |
| L-Fucose | Atu4034 | two component sensor kinase | +1.5 | |
| L-Fucose | Atu4035 | two component response regulator | +1.7 | |
| L-Fucose | Atu4465 | transcriptional regulator | +1.1 | |
| L-Fucose | Atu4466 | oxidoreductase | -3.9 | Yes |
| L-Galactose | Atu0405 | long-chain-fatty-acid-CoA-ligase | -2.4 | |
| L-Galactose | Atu1572 | hydrolase | -1.7 | |
| L-Galactose | Atu2296 | 2-dehydro-3-deoxygluconokinase | -5.1 | |
| L-Galactose | Atu2813 | altronate oxidoreductase | -3.7 | |
| L-Galactose | Atu2814 | zinc-binding dehydrogenase | -5.9 | |
| L-Galactose | Atu2815 | hypothetical protein | -5.8 | |
| L-Galactose | Atu2816 | oxidoreductase | -5.3 | |
| L-Galactose | Atu2817 | ABC transporter, substrate binding protein (ribose) | -3.1 | |
| L-Galactose | Atu2818 | ABC transporter, membrane spanning protein (ribose) | -3.9 | |
| L-Galactose | Atu2819 | ABC transporter, nucleotide binding/ATPase protein (ribose) | -4.4 | |
| L-Galactose | Atu2822 | D-galactarate dehydratase | -2.0 | |
| L-Rhamnose monohydrate | Atu1778 | transcription-repair coupling factor | -1.3 | |
| L-Rhamnose monohydrate | Atu3484 | hypothetical protein | -2.8 | Yes |
| L-Rhamnose monohydrate | Atu3487 | sugar ABC transporter substrate-binding protein | -2.9 | Yes |
| L-Rhamnose monohydrate | Atu3488 | ABC transporter permease | -2.9 | Yes |
| L-Rhamnose monohydrate | Atu3489 | ABC transporter permease | -2.9 | Yes |
| L-Rhamnose monohydrate | Atu3490 | ABC transporter permease | -2.9 | Yes |
| L-Rhamnose monohydrate | Atu3491 | hypothetical protein | -3.0 | Yes |
| L-Rhamnose monohydrate | Atu3492 | sugar kinase | -3.3 | Yes |
| L-Rhamnose monohydrate | Atu3871 | L-lactate dehydrogenase | -2.1 | |
| L-Rhamnose monohydrate | Atu4465 | transcriptional regulator | +1.6 | Yes |
| L-Xylose | Atu0014 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | -3.6 | |
| L-Xylose | Atu0664 | transcriptional regulator, LysR family | -2.0 | |
| L-Xylose | Atu0665 | glycolate oxidase subunit | -2.3 | |
| L-Xylose | Atu0666 | glycolate oxidase subunit | -2.4 | |
| L-Xylose | Atu0667 | glycolate oxidase iron-sulfur subunit | -2.3 | |
| L-Xylose | Atu0770 | cytochrome C oxidase assembly protein | -1.8 | |
| L-Xylose | Atu0771 | cytochrome c oxidase subunit III | -1.5 | |
| L-Xylose | Atu1516 | hypothetical protein | -1.6 | |
| L-Xylose | Atu1517 | hypothetical protein | -2.1 | |
| L-Xylose | Atu1564 | hypothetical protein | -1.4 | |
| L-Xylose | Atu2814 | zinc-binding dehydrogenase | +1.4 | |
| L-Xylose | Atu2822 | D-galactarate dehydratase | -1.2 | |
| L-Xylose | Atu3240 | ROK family transcriptional regulator | -1.5 | |
| L-Xylose | Atu3813 | 3-oxoacyl-ACP reductase | -1.2 | |
| L-Xylose | Atu3817 | dehydratase | -2.2 | |
| L-Xylose | Atu4029 | gluconolactonase | -1.5 | |
| L-Xylose | Atu4034 | two component sensor kinase | +1.0 | |
| L-Xylose | Atu4128 | GMC type oxidoreductase | +1.5 | |
| L-Xylose | Atu4318 | xylitol dehydrogenase | -1.1 | |
| L-Xylose | Atu4482 | xylulokinase | -1.0 | |
| L-Xylose | Atu4501 | hypothetical protein | -1.3 | |
| L-ascorbate | Atu0014 | 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | -1.8 | |
| L-ascorbate | Atu0074 | molybdopterin biosynthesis protein | -1.6 | |
| L-ascorbate | Atu0077 | D-isomer specific 2-hydroxyacid dehydrogenases family protein | -1.1 | |
| L-ascorbate | Atu0098 | mutT/nudix family protein | -2.6 | |
| L-ascorbate | Atu0105 | hypothetical protein | +1.3 | |
| L-ascorbate | Atu0132 | 2-deoxyribose-5-phosphate aldolase | +1.2 | |
| L-ascorbate | Atu0195 | gluconokinase | -5.9 | |
| L-ascorbate | Atu0257 | hypothetical protein | +2.3 | |
| L-ascorbate | Atu0328 | heat-inducible transcription repressor | -1.6 | |
| L-ascorbate | Atu0479 | ABC transporter, substrate binding protein (amino acid) | -1.9 | |
| L-ascorbate | Atu0631 | molybdenum cofactor biosynthesis protein B | -1.1 | |
| L-ascorbate | Atu0665 | glycolate oxidase subunit | +1.5 | |
| L-ascorbate | Atu0666 | glycolate oxidase subunit | +1.7 | |
| L-ascorbate | Atu0667 | glycolate oxidase iron-sulfur subunit | +1.4 | |
| L-ascorbate | Atu0786 | peptidase, family M16 | +2.8 | |
| L-ascorbate | Atu0897 | protease II | +1.3 | |
| L-ascorbate | Atu0931 | penicillin binding protein | -2.2 | |
| L-ascorbate | Atu0996 | zinc-binding dehydrogenase | +2.5 | |
| L-ascorbate | Atu0997 | hypothetical protein | +2.5 | |
| L-ascorbate | Atu1054 | hypothetical protein | -1.8 | |
| L-ascorbate | Atu1086 | MFS permease | +1.0 | |
| L-ascorbate | Atu1100 | hypothetical protein | -1.0 | |
| L-ascorbate | Atu1126 | molybdopterin converting factor, large subunit | -1.7 | |
| L-ascorbate | Atu1130 | dehydrogenase | +1.1 | |
| L-ascorbate | Atu1134 | hypothetical protein | -1.7 | |
| L-ascorbate | Atu1285 | metal dependent hydrolase | -2.9 | |
| L-ascorbate | Atu1380 | zinc metallopeptidase | -1.5 | |
| L-ascorbate | Atu1405 | transcriptional regulator, GntR family | +1.5 | |
| L-ascorbate | Atu1522 | transcriptional regulator, LacI family | -1.3 | |
| L-ascorbate | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -5.8 | |
| L-ascorbate | Atu1578 | ABC transporter, membrane spanning protein (amino acid) | -1.5 | |
| L-ascorbate | Atu1579 | ABC transporter, membrane spanning protein (amino acid) | -1.3 | |
| L-ascorbate | Atu1592 | hypothetical protein | -3.2 | |
| L-ascorbate | Atu1670 | alcohol dehydrogenase class III | -1.1 | |
| L-ascorbate | Atu1690 | molybdopterin biosynthesis protein | -1.5 | |
| L-ascorbate | Atu1694 | hypothetical protein | +1.5 | |
| L-ascorbate | Atu1695 | molybdenum cofactor biosynthesis protein A | -1.5 | |
| L-ascorbate | Atu1698 | molybdopterin-guanine dinucleotide biosynthesis protein A | -1.1 | |
| L-ascorbate | Atu2010 | GGDEF family protein | -1.6 | |
| L-ascorbate | Atu2069 | hypothetical protein | -1.0 | |
| L-ascorbate | Atu2124 | transcriptional regulator, ArsR family | -1.4 | |
| L-ascorbate | Atu2133 | hypothetical protein | -1.1 | |
| L-ascorbate | Atu2174 | hypothetical protein | -2.7 | |
| L-ascorbate | Atu2370 | hypothetical protein | -1.4 | |
| L-ascorbate | Atu2428 | exopolysaccharide production protein PssB | -1.5 | |
| L-ascorbate | Atu2489 | hypothetical protein | -1.4 | |
| L-ascorbate | Atu2565 | hypothetical protein | -1.4 | |
| L-ascorbate | Atu2614 | hypothetical protein | -3.8 | |
| L-ascorbate | Atu2619 | NAD-dependent formate dehydrogenase, C subunit protein | -1.3 | |
| L-ascorbate | Atu2665 | transcriptional regulator, MarR family | -1.3 | |
| L-ascorbate | Atu2737 | oxidoredutase | -4.5 | |
| L-ascorbate | Atu2739 | oxidoreductase | +2.6 | |
| L-ascorbate | Atu2740 | transcriptional regulator, GntR family | +4.9 | |
| L-ascorbate | Atu2753 | ATP-dependent helicase | +1.8 | |
| L-ascorbate | Atu3075 | TetR family transcriptional regulator | -2.3 | |
| L-ascorbate | Atu3226 | GntR family transcriptional regulator | -3.3 | |
| L-ascorbate | Atu3369 | hypothetical protein | -1.2 | |
| L-ascorbate | Atu3505 | 3-hydroxyisobutyryl-CoA hydrolase | -2.3 | |
| L-ascorbate | Atu3532 | GntR family transcriptional regulator | +2.4 | |
| L-ascorbate | Atu3616 | hypothetical protein | -3.8 | |
| L-ascorbate | Atu3623 | DnaJ family molecular chaperone | +3.6 | |
| L-ascorbate | Atu3779 | lytic murein transglycosylase | -1.8 | |
| L-ascorbate | Atu3780 | hypothetical protein | -2.2 | |
| L-ascorbate | Atu3878 | transcriptional regulator | +3.3 | |
| L-ascorbate | Atu3886 | lysophospholipase | -1.9 | |
| L-ascorbate | Atu3888 | hypothetical protein | -1.9 | |
| L-ascorbate | Atu4019 | two component response regulator | -1.6 | |
| L-ascorbate | Atu4020 | hypothetical protein | -1.2 | |
| L-ascorbate | Atu4030 | sugar ABC transporter permease | -1.2 | |
| L-ascorbate | Atu4033 | sugar ABC transporter substrate-binding protein | -1.1 | |
| L-ascorbate | Atu4077 | glycogen branching protein | -2.8 | |
| L-ascorbate | Atu4085 | 2-hydroxy-3-oxopropionate reductase | -5.5 | |
| L-ascorbate | Atu4086 | gluconate 5-dehydrogenase | -6.4 | |
| L-ascorbate | Atu4087 | zinc-binding dehydrogenase | -6.0 | |
| L-ascorbate | Atu4160 | RNA polymerase sigma factor | -1.6 | |
| L-ascorbate | Atu4364 | LacI family transcriptional regulator | -2.1 | |
| L-ascorbate | Atu4477 | TetR family transcriptional regulator | -3.2 | |
| L-ascorbate | Atu4501 | hypothetical protein | -1.9 | |
| L-ascorbate | Atu4530 | TetR family transcriptional regulator | -1.8 | |
| L-ascorbate | Atu4641 | LysR family transcriptional regulator | +1.6 | |
| L-ascorbate | Atu4670 | hypothetical protein | +1.1 | |
| L-ascorbate | Atu4687 | amino acid ABC transporter substrate-binding protein | -4.8 | |
| L-ascorbate | Atu4688 | amino acid ABC transporter permease | -4.6 | |
| L-ascorbate | Atu4689 | amino acid ABC transporter permease | -4.6 | |
| L-ascorbate | Atu4690 | amino acid ABC transporter ATPase/permease | -4.7 | |
| L-ascorbate | Atu4691 | 2-hydroxyacid dehydrogenase | -5.9 | |
| L-ascorbate | Atu4705 | LysR family transcriptional regulator | -1.3 | |
| L-ascorbate | Atu4743 | LacI family transcriptional regulator | -3.8 | |
| L-ascorbate | Atu4824 | IclR family transcriptional regulator | +3.5 | |
| L-ascorbate | Atu4825 | dehydrogenase | +3.1 | |
| L-ascorbate | Atu4841 | DeoR family transcriptional regulator | +1.2 | |
| L-ascorbate | Atu4873 | TetR family transcriptional regulator | +1.9 | |
| L-ascorbate | Atu5443 | TetR family transcriptional regulator | -1.5 | |
| Lactitol | Atu3021 | sugar ABC transporter ATPase | +1.4 | |
| Lactitol | Atu3147 | oxidoreductase | -5.2 | |
| Lactitol | Atu3148 | sugar ABC transporter ATPase | -3.7 | |
| Lactitol | Atu3149 | sugar ABC transporter permease | -3.7 | |
| Lactitol | Atu3150 | sugar ABC transporter permease | -5.3 | |
| Lactitol | Atu3151 | sugar ABC transporter substrate-binding protein | -5.7 | Yes |
| Lactitol | Atu3152 | AraC family transcriptional regulator | -4.3 | |
| Lactitol | Atu3347 | hypothetical protein | -4.8 | Yes |
| Lactitol | Atu3348 | hypothetical protein | -4.8 | Yes |
| Lactitol | Atu3349 | ABC transporter permease | -3.5 | Yes |
| Lactitol | Atu3350 | ABC transporter permease | -3.8 | Yes |
| Lactitol | Atu3351 | sugar ABC transporter permease | -3.8 | Yes |
| Lactitol | Atu3352 | sugar ABC transporter substrate-binding protein | -4.2 | |
| Lactitol | Atu4318 | xylitol dehydrogenase | -1.4 | |
| Lactulose | Atu0535 | hypothetical protein | -1.5 | |
| Lactulose | Atu0786 | peptidase, family M16 | -1.8 | |
| Lactulose | Atu1113 | dehydrogenase | variable | |
| Lactulose | Atu3147 | oxidoreductase | -5.2 | |
| Lactulose | Atu3148 | sugar ABC transporter ATPase | -4.3 | Yes |
| Lactulose | Atu3149 | sugar ABC transporter permease | -4.2 | |
| Lactulose | Atu3150 | sugar ABC transporter permease | -6.0 | Yes |
| Lactulose | Atu3151 | sugar ABC transporter substrate-binding protein | -5.8 | Yes |
| Lactulose | Atu3152 | AraC family transcriptional regulator | -5.3 | |
| Lactulose | Atu3347 | hypothetical protein | -5.4 | |
| Lactulose | Atu3348 | hypothetical protein | -5.6 | |
| Lactulose | Atu3349 | ABC transporter permease | -4.1 | |
| Lactulose | Atu3350 | ABC transporter permease | -3.9 | |
| Lactulose | Atu3351 | sugar ABC transporter permease | -4.4 | |
| Lactulose | Atu3352 | sugar ABC transporter substrate-binding protein | -4.0 | |
| Maltitol | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -2.4 | Yes |
| Maltitol | Atu3339 | trehalose/maltose ABC transporter permease | -2.5 | Yes |
| Maltitol | Atu3340 | trehalose/maltose ABC transporter permease | -2.3 | Yes |
| Maltitol | Atu3341 | trehalose/maltose ABC transporter ATPase | -2.0 | Yes |
| Maltitol | Atu3342 | trehalose utilization-like protein | -4.6 | |
| Maltitol | Atu3343 | trehalose utilization-like protein | -4.4 | Yes |
| Maltitol | Atu4318 | xylitol dehydrogenase | -1.7 | |
| Maltitol | Atu4449 | sorbitol/mannitol ABC transporter permease | +1.0 | Yes |
| Maltotriose hydrate | Atu2578 | cAMP-dependent protein kinase regulatory subunit | -1.6 | |
| Maltotriose hydrate | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -1.9 | |
| Maltotriose hydrate | Atu3339 | trehalose/maltose ABC transporter permease | -2.3 | |
| Maltotriose hydrate | Atu3340 | trehalose/maltose ABC transporter permease | -2.0 | |
| Maltotriose hydrate | Atu3341 | trehalose/maltose ABC transporter ATPase | -1.6 | |
| Maltotriose hydrate | Atu3342 | trehalose utilization-like protein | -3.6 | |
| Maltotriose hydrate | Atu3343 | trehalose utilization-like protein | -4.6 | |
| Mannobiose | Atu0591 | ABC transporter, substrate binding protein (alpha-glucoside) | -2.6 | |
| Mannobiose | Atu0592 | ABC transporter, membrane spanning protein | -2.3 | |
| Mannobiose | Atu0593 | ABC transporter, membrane spanning protein | -2.6 | |
| Mannobiose | Atu0595 | ABC transporter, nucleotide binding/ATPase protein | -1.2 | |
| Mannobiose | Atu1437 | hypothetical protein | -2.6 | |
| Mannobiose | Atu1438 | transcriptional regulator, AraC family | -1.5 | |
| Mannobiose | Atu1522 | transcriptional regulator, LacI family | +2.2 | |
| Mannobiose | Atu1523 | beta-mannosidase precursor | -2.1 | Yes |
| Mannobiose | Atu2156 | hypothetical protein | -2.8 | |
| Mannobiose | Atu3347 | hypothetical protein | -2.0 | |
| Mannobiose | Atu3348 | hypothetical protein | -2.3 | |
| Mannobiose | Atu3349 | ABC transporter permease | -1.8 | Yes |
| Mannobiose | Atu3350 | ABC transporter permease | -2.0 | Yes |
| Mannobiose | Atu3351 | sugar ABC transporter permease | -2.4 | Yes |
| Mannobiose | Atu3352 | sugar ABC transporter substrate-binding protein | -2.1 | Yes |
| Melibiose | Atu0405 | long-chain-fatty-acid-CoA-ligase | -1.7 | |
| Melibiose | Atu0704 | 2-dehydro-3-deoxygalactonate kinase | -2.8 | |
| Melibiose | Atu0705 | 3-oxoacyl-(acyl carrier protein) reductase | -2.1 | |
| Melibiose | Atu1113 | dehydrogenase | -2.0 | |
| Melibiose | Atu4659 | AraC family transcriptional regulator | -5.5 | |
| Melibiose | Atu4660 | alpha-galactosidase | -4.8 | |
| Melibiose | Atu4661 | alpha-galactoside ABC transporter substrate-binding protein | -4.9 | |
| Melibiose | Atu4662 | oligopeptide ABC transporter permease | -4.9 | |
| Melibiose | Atu4663 | oligopeptide ABC transporter permease | -5.4 | |
| Melibiose | Atu4664 | oligopeptide ABC transporter ATPase | -5.0 | |
| Melibiose | Atu4665 | alpha-galactosidase | -5.4 | |
| Methyl alpha-D-glucopyranoside | Atu0591 | ABC transporter, substrate binding protein (alpha-glucoside) | -1.5 | |
| Methyl alpha-D-glucopyranoside | Atu0593 | ABC transporter, membrane spanning protein | -1.4 | |
| Methyl alpha-D-glucopyranoside | Atu0594 | alpha-glucosidase | -1.3 | |
| Methyl alpha-D-glucopyranoside | Atu0595 | ABC transporter, nucleotide binding/ATPase protein | -1.6 | |
| Methyl alpha-D-glucopyranoside | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -6.1 | |
| Methyl alpha-D-glucopyranoside | Atu3339 | trehalose/maltose ABC transporter permease | -4.9 | |
| Methyl alpha-D-glucopyranoside | Atu3340 | trehalose/maltose ABC transporter permease | -5.7 | |
| Methyl alpha-D-glucopyranoside | Atu3341 | trehalose/maltose ABC transporter ATPase | -4.2 | |
| Methyl alpha-D-glucopyranoside | Atu3342 | trehalose utilization-like protein | -6.3 | |
| Methyl alpha-D-glucopyranoside | Atu3343 | trehalose utilization-like protein | -2.5 | |
| Methyl alpha-D-glucopyranoside | Atu3898 | DeoR family transcriptional regulator | -1.1 | |
| Methyl alpha-D-glucopyranoside | Atu4370 | sugar ABC transporter ATPase | -1.2 | |
| Methyl alpha-D-glucopyranoside | Atu4372 | ribose ABC transporter permease | -1.2 | |
| Methyl alpha-D-glucopyranoside | Atu4374 | hypothetical protein | -1.2 | |
| Methyl alpha-D-glucopyranoside | Atu4375 | hypothetical protein | -1.3 | |
| Methyl beta-D-glucopyranoside | Atu1522 | transcriptional regulator, LacI family | +1.2 | |
| Methyl beta-D-glucopyranoside | Atu1526 | 6-phosphogluconate dehydrogenase, decarboxylating | -1.3 | |
| Methyl beta-D-glucopyranoside | Atu3240 | ROK family transcriptional regulator | -3.0 | |
| Methyl beta-D-glucopyranoside | Atu3348 | hypothetical protein | -1.1 | |
| Methyl beta-D-glucopyranoside | Atu4369 | sugar ABC transporter substrate-binding protein | -3.9 | |
| Methyl beta-D-glucopyranoside | Atu4370 | sugar ABC transporter ATPase | -3.3 | |
| Methyl beta-D-glucopyranoside | Atu4371 | sugar ABC transporter permease | -3.0 | |
| Methyl beta-D-glucopyranoside | Atu4372 | ribose ABC transporter permease | -3.7 | |
| Methyl beta-D-glucopyranoside | Atu4373 | LacI family transcriptional regulator | -2.4 | |
| Methyl beta-D-glucopyranoside | Atu4374 | hypothetical protein | -2.1 | |
| Methyl beta-D-glucopyranoside | Atu4375 | hypothetical protein | -2.6 | |
| Methyl-B-D-galactopyranoside | Atu0664 | transcriptional regulator, LysR family | -1.4 | |
| Methyl-B-D-galactopyranoside | Atu1522 | transcriptional regulator, LacI family | +1.6 | |
| Methyl-B-D-galactopyranoside | Atu3147 | oxidoreductase | -1.7 | |
| Methyl-B-D-galactopyranoside | Atu3148 | sugar ABC transporter ATPase | -1.2 | |
| Methyl-B-D-galactopyranoside | Atu3149 | sugar ABC transporter permease | -1.1 | |
| Methyl-B-D-galactopyranoside | Atu3150 | sugar ABC transporter permease | -1.5 | |
| Methyl-B-D-galactopyranoside | Atu3151 | sugar ABC transporter substrate-binding protein | -1.4 | |
| Methyl-B-D-galactopyranoside | Atu3152 | AraC family transcriptional regulator | -1.3 | |
| Methyl-B-D-galactopyranoside | Atu3347 | hypothetical protein | -1.5 | |
| Methyl-B-D-galactopyranoside | Atu3348 | hypothetical protein | -2.2 | |
| Methyl-B-D-galactopyranoside | Atu3349 | ABC transporter permease | -1.9 | |
| Methyl-B-D-galactopyranoside | Atu3350 | ABC transporter permease | -1.5 | |
| Methyl-B-D-galactopyranoside | Atu3351 | sugar ABC transporter permease | -1.6 | |
| Methyl-B-D-galactopyranoside | Atu3352 | sugar ABC transporter substrate-binding protein | -1.6 | |
| Myristic acid | Atu0405 | long-chain-fatty-acid-CoA-ligase | -1.5 | Yes |
| Myristic acid | Atu1717 | long-chain fatty acid transport protein | +1.3 | Yes |
| Myristic acid | Atu3505 | 3-hydroxyisobutyryl-CoA hydrolase | -1.6 | |
| N-Acetyl-D-Glucosamine | Atu0291 | hypothetical protein | -1.6 | |
| N-Acetyl-D-Glucosamine | Atu0405 | long-chain-fatty-acid-CoA-ligase | variable | |
| N-Acetyl-D-Glucosamine | Atu0770 | cytochrome C oxidase assembly protein | -2.7 | |
| N-Acetyl-D-Glucosamine | Atu0771 | cytochrome c oxidase subunit III | -2.8 | |
| N-Acetyl-D-Glucosamine | Atu0790 | hypothetical protein | -6.4 | |
| N-Acetyl-D-Glucosamine | Atu0816 | sulfate adenylate transferase, subunit 1 | -1.0 | |
| N-Acetyl-D-Glucosamine | Atu0817 | sulfate adenylate transferase, subunit 2 | -1.0 | |
| N-Acetyl-D-Glucosamine | Atu0818 | phosphoadenosine phosphosulfate reductase | -1.1 | |
| N-Acetyl-D-Glucosamine | Atu0981 | glutamate-ammonia-ligase adenylyltransferase | -2.5 | |
| N-Acetyl-D-Glucosamine | Atu1126 | molybdopterin converting factor, large subunit | -1.1 | |
| N-Acetyl-D-Glucosamine | Atu1303 | exoribonuclease | -1.6 | |
| N-Acetyl-D-Glucosamine | Atu1449 | potassium uptake protein | -1.5 | |
| N-Acetyl-D-Glucosamine | Atu2511 | D-alanine aminotransferase | -1.2 | |
| N-Acetyl-D-Glucosamine | Atu2593 | copper homeostasis protein | +1.1 | |
| N-Acetyl-D-Glucosamine | Atu2595 | hypothetical protein | +1.2 | |
| N-Acetyl-D-Glucosamine | Atu2596 | beta-N-acetylhexosaminidase | +1.0 | |
| N-Acetyl-D-Glucosamine | Atu2598 | transcriptional regulator, RpiR family | +4.2 | |
| N-Acetyl-D-Glucosamine | Atu2600 | ABC transporter, nucleotide binding/ATPase protein (maltose/maltodextrin) | -6.3 | |
| N-Acetyl-D-Glucosamine | Atu2601 | ABC transporter, substrate binding protein (maltose) | -7.4 | |
| N-Acetyl-D-Glucosamine | Atu2602 | ABC transporter, membrane spanning protein (maltose) | -6.7 | |
| N-Acetyl-D-Glucosamine | Atu2603 | ABC transporter, membrane spanning protein (maltose) | -6.9 | |
| N-Acetyl-D-Glucosamine | Atu2604 | oxidoreductase | -6.4 | |
| N-Acetyl-D-Glucosamine | Atu2606 | transcriptional regulator, GntR family | -5.8 | Yes |
| N-Acetyl-D-Glucosamine | Atu2607 | glucosamine--fructose-6-phosphate aminotransferase | -5.7 | Yes |
| N-Acetyl-D-Glucosamine | Atu2608 | N-acetylglucosamine-6-phosphate deacetylase | -6.7 | Yes |
| N-Acetyl-D-Glucosamine | Atu2609 | transcriptional regulator, ROK family | -7.6 | |
| N-Acetyl-D-Glucosamine | Atu2678 | 2'-5' RNA ligase | -1.3 | |
| N-Acetyl-D-Glucosamine | Atu3115 | TetR family transcriptional regulator | -1.5 | |
| N-Acetyl-D-Glucosamine | Atu3144 | GntR family transcriptional regulator | -1.8 | |
| N-Acetyl-D-Glucosamine | Atu3226 | GntR family transcriptional regulator | -1.1 | |
| N-Acetyl-D-Glucosamine | Atu3574 | xylose ABC transporter ATPase | -1.1 | |
| N-Acetyl-D-Glucosamine | Atu3575 | xylose ABC transporter permease | -1.2 | |
| N-Acetyl-D-Glucosamine | Atu3577 | transcriptional regulator | +3.2 | Yes |
| N-Acetyl-D-Glucosamine | Atu3835 | hypothetical protein | -1.1 | |
| N-Acetyl-D-Glucosamine | Atu3912 | hypothetical protein | -2.1 | |
| N-Acetyl-D-Glucosamine | Atu3928 | hypothetical protein | +2.5 | |
| N-Acetyl-D-Glucosamine | Atu4128 | GMC type oxidoreductase | -1.4 | |
| N-Acetyl-D-Glucosamine | Atu4364 | LacI family transcriptional regulator | -1.8 | |
| N-Acetyl-D-Glucosamine | Atu4530 | TetR family transcriptional regulator | -1.7 | |
| N-Acetyl-D-Glucosamine | Atu4576 | ROK family transcriptional regulator | -1.4 | |
| N-Acetyl-D-Glucosamine | Atu5464 | IclR family transcriptional regulator | -1.5 | |
| N-Acetyl-D-Glucosamine | Atu8181 | hypothetical protein | +1.3 | |
| N-alpha-Acetyl-L-glutamate | Atu0626 | alcohol dehydrogenase | -2.0 | |
| N-alpha-Acetyl-L-glutamate | Atu0663 | hypothetical protein | -1.5 | |
| N-alpha-Acetyl-L-glutamate | Atu0664 | transcriptional regulator, LysR family | -1.3 | |
| N-alpha-Acetyl-L-glutamate | Atu2224 | aldehyde dehydrogenase | -2.2 | |
| N-alpha-Acetyl-L-glutamate | Atu4702 | GntR family transcriptional regulator | +11.8 | |
| Propan-1-ol | Atu0626 | alcohol dehydrogenase | -1.1 | |
| Propan-1-ol | Atu2810 | cobalamin biosynthetic protein | -1.8 | |
| Propan-1-ol | Atu3579 | lactoylglutathione lyase | -5.7 | |
| Propan-1-ol | Atu3580 | methylmalonyl-CoA mutase | -4.6 | |
| Propan-1-ol | Atu3581 | propionyl-coenzyme A carboxylase, alpha polypeptide | -2.7 | |
| Propan-1-ol | Atu3582 | hypothetical protein | -2.0 | |
| Propan-1-ol | Atu3583 | hypothetical protein | -2.5 | |
| Propan-1-ol | Atu3585 | glutathione S-transferase | -2.5 | |
| Propan-1-ol | Atu3586 | propionyl-CoA carboxylase | -2.5 | |
| Propan-1-ol | Atu3587 | transcriptional regulator | -2.2 | |
| Protocatechuic Acid | Atu2045 | HFLK protein | -1.9 | |
| Protocatechuic Acid | Atu4515 | branched chain amino acid ABC transporter ATPase | -3.2 | Yes |
| Protocatechuic Acid | Atu4516 | branched chain amino acid ABC transporter ATPase | -2.9 | |
| Protocatechuic Acid | Atu4517 | branched chain amino acid ABC transporter permease | -3.2 | Yes |
| Protocatechuic Acid | Atu4518 | branched chain amino acid ABC transporter permease | -2.8 | Yes |
| Protocatechuic Acid | Atu4519 | branched amino acid ABC transporter substrate-binding protein | -3.3 | Yes |
| Protocatechuic Acid | Atu4538 | 3-carboxy-cis,cis-muconate cycloisomerase | -8.3 | |
| Protocatechuic Acid | Atu4539 | protocatechuate 3,4-dioxygenase alpha chain | -4.1 | Yes |
| Protocatechuic Acid | Atu4542 | beta-ketoadipate enol-lactone hydrolase | -6.5 | Yes |
| Protocatechuic Acid | Atu4543 | LysR family transcriptional regulator | -3.5 | |
| Protocatechuic Acid | Atu4546 | IclR family transcriptional regulator | -1.7 | Yes |
| Protocatechuic Acid | Atu4547 | 3-oxoadipate CoA-transferase subunit A | -7.5 | |
| Protocatechuic Acid | Atu4548 | 3-oxoadipate CoA-transferase subunit B | -7.3 | Yes |
| Protocatechuic Acid | Atu4549 | beta-ketoadipyl CoA thiolase | -8.0 | Yes |
| Quinic Acid | Atu0405 | long-chain-fatty-acid-CoA-ligase | -1.8 | |
| Quinic Acid | Atu4529 | hypothetical protein | -7.1 | Yes |
| Quinic Acid | Atu4530 | TetR family transcriptional regulator | -2.4 | |
| Quinic Acid | Atu4531 | 3-dehydroquinate dehydratase | -6.8 | Yes |
| Quinic Acid | Atu4532 | shikimate 5-dehydrogenase | -6.4 | Yes |
| Quinic Acid | Atu4533 | amino acid ABC transporter ATPase/permease | -5.4 | |
| Quinic Acid | Atu4534 | amino acid ABC transporter substrate-binding protein | -4.7 | |
| Quinic Acid | Atu4535 | amino acid ABC transporter substrate-binding protein | -5.1 | |
| Quinic Acid | Atu4536 | amino acid ABC transporter permease | -4.5 | |
| Quinic Acid | Atu4537 | amino acid ABC transporter permease | -5.1 | |
| Quinic Acid | Atu4538 | 3-carboxy-cis,cis-muconate cycloisomerase | -7.2 | |
| Quinic Acid | Atu4539 | protocatechuate 3,4-dioxygenase alpha chain | -5.3 | Yes |
| Quinic Acid | Atu4540 | protocatechuate 3,4-dioxygenase subunit beta | -5.6 | Yes |
| Quinic Acid | Atu4542 | beta-ketoadipate enol-lactone hydrolase | -6.4 | Yes |
| Quinic Acid | Atu4543 | LysR family transcriptional regulator | -3.9 | |
| Quinic Acid | Atu4547 | 3-oxoadipate CoA-transferase subunit A | -7.5 | |
| Quinic Acid | Atu4548 | 3-oxoadipate CoA-transferase subunit B | -8.0 | Yes |
| Quinic Acid | Atu4549 | beta-ketoadipyl CoA thiolase | -6.7 | Yes |
| Rhamnogalacturonan - from potato | Atu0091 | MFS permease | -1.0 | |
| Rhamnogalacturonan - from potato | Atu3115 | TetR family transcriptional regulator | +1.4 | |
| Rhamnogalacturonan - from potato | Atu3128 | di-trans,poly-cis-decaprenylcistransferase | -1.3 | |
| Rhamnogalacturonan - from potato | Atu3129 | polygalacturonase-like protein | -2.5 | |
| Rhamnogalacturonan - from potato | Atu3130 | sugar ABC transporter substrate-binding protein | -2.4 | |
| Rhamnogalacturonan - from potato | Atu3131 | sugar ABC transporter ATPase | -2.5 | |
| Rhamnogalacturonan - from potato | Atu3132 | sugar ABC transporter permease | -1.8 | |
| Rhamnogalacturonan - from potato | Atu3133 | sugar ABC transporter permease | -3.1 | |
| Rhamnogalacturonan - from potato | Atu3134 | AraC family transcriptional regulator | -2.5 | |
| Rhamnogalacturonan - from potato | Atu3138 | hypothetical protein | -3.3 | |
| Rhamnogalacturonan - from potato | Atu3139 | hypothetical protein | -4.3 | |
| Rhamnogalacturonan - from potato | Atu3140 | 5-dehydro-4-deoxyglucarate dehydratase | -3.5 | Yes |
| Rhamnogalacturonan - from potato | Atu3143 | hypothetical protein | -3.8 | Yes |
| Rhamnogalacturonan - from potato | Atu3343 | trehalose utilization-like protein | -2.7 | |
| Ribitol | Atu0405 | long-chain-fatty-acid-CoA-ligase | -1.5 | |
| Ribitol | Atu1572 | hydrolase | -1.7 | |
| Ribitol | Atu4319 | AraC family transcriptional regulator | -2.3 | |
| Ribitol | Atu4320 | ribose ABC transporter substrate-binding protein | -1.8 | |
| Ribitol | Atu4321 | ribose ABC transporter ATPase | -2.4 | |
| Ribitol | Atu4322 | ribose ABC transporter permease | -2.6 | |
| Ribitol | Atu4323 | ribitol 2-dehydrogenase | -5.3 | |
| Ribitol | Atu4324 | ribitol kinase | -6.0 | |
| Sodium Fumarate dibasic | Atu2045 | HFLK protein | -1.5 | |
| Sodium Fumarate dibasic | Atu4530 | TetR family transcriptional regulator | +2.4 | |
| Sodium acetate | Atu0484 | two component response regulator | -2.4 | Yes |
| Sodium acetate | Atu0527 | two component sensor kinase/response regulator hybrid | -2.0 | Yes |
| Sodium acetate | Atu0664 | transcriptional regulator, LysR family | -2.9 | Yes |
| Sodium cholate hydrate | Atu0626 | alcohol dehydrogenase | -1.7 | |
| Sodium cholate hydrate | Atu0663 | hypothetical protein | -1.8 | |
| Sodium cholate hydrate | Atu0664 | transcriptional regulator, LysR family | -1.7 | |
| Sodium cholate hydrate | Atu2224 | aldehyde dehydrogenase | -2.6 | |
| Sodium pyruvate | Atu0484 | two component response regulator | -1.2 | Yes |
| Sodium pyruvate | Atu2492 | MFS permease | -1.3 | |
| Sodium pyruvate | Atu2493 | NAD(P)+ transhydrogenase | -1.0 | |
| Sodium pyruvate | Atu2494 | NAD(P)+ transhydrogenase beta chain | -1.1 | Yes |
| Sodium succinate dibasic hexahydrate | Atu3296 | two component response regulator for C4-dicarboxylate transport | -1.4 | Yes |
| Sodium succinate dibasic hexahydrate | Atu3297 | two component sensor kinase for C4-dicarboxylate transport | -1.6 | |
| Sodium succinate dibasic hexahydrate | Atu3298 | C4-dicarboxylate transporter DctA | -1.6 | Yes |
| Sodium succinate dibasic hexahydrate | Atu4530 | TetR family transcriptional regulator | +2.3 | |
| Stachyose hydrate | Atu0704 | 2-dehydro-3-deoxygalactonate kinase | -1.6 | |
| Stachyose hydrate | Atu1113 | dehydrogenase | -1.9 | |
| Stachyose hydrate | Atu2578 | cAMP-dependent protein kinase regulatory subunit | -3.1 | |
| Stachyose hydrate | Atu4659 | AraC family transcriptional regulator | -4.9 | |
| Stachyose hydrate | Atu4660 | alpha-galactosidase | -4.3 | |
| Stachyose hydrate | Atu4661 | alpha-galactoside ABC transporter substrate-binding protein | -4.9 | |
| Stachyose hydrate | Atu4662 | oligopeptide ABC transporter permease | -5.6 | |
| Stachyose hydrate | Atu4663 | oligopeptide ABC transporter permease | -5.7 | |
| Stachyose hydrate | Atu4664 | oligopeptide ABC transporter ATPase | -4.3 | |
| Stachyose hydrate | Atu4665 | alpha-galactosidase | -5.7 | |
| Sucrose | Atu0591 | ABC transporter, substrate binding protein (alpha-glucoside) | -3.3 | |
| Sucrose | Atu0592 | ABC transporter, membrane spanning protein | -3.4 | |
| Sucrose | Atu0593 | ABC transporter, membrane spanning protein | -2.8 | |
| Sucrose | Atu0594 | alpha-glucosidase | -1.8 | Yes |
| Sucrose | Atu0595 | ABC transporter, nucleotide binding/ATPase protein | -3.9 | |
| Sucrose | Atu1572 | hydrolase | -1.6 | |
| Sucrose | Atu4864 | MarR family transcriptional regulator | variable | |
| Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) | Atu1372 | hypothetical protein | -1.3 | |
| Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) | Atu4879 | hypothetical protein | +1.4 | |
| Uridine 5-monophosphate disodium salt | Atu0126 | membrane lipoprotein | -1.6 | |
| Uridine 5-monophosphate disodium salt | Atu0127 | ABC transporter, nucleotide binding/ATPase protein (sugar/ribonucleotide) | -1.3 | |
| Uridine 5-monophosphate disodium salt | Atu0128 | ABC transporter, membrane spanning protein (sugar/ribonucleotide) | -1.3 | |
| Uridine 5-monophosphate disodium salt | Atu0129 | ABC transporter, membrane spanning protein (sugar/ribonucleotide) | -1.4 | |
| Uridine 5-monophosphate disodium salt | Atu0374 | inosine-uridine preferring nucleoside hydrolase | -1.5 | |
| Uridine 5-monophosphate disodium salt | Atu0626 | alcohol dehydrogenase | -1.4 | |
| Uridine 5-monophosphate disodium salt | Atu0664 | transcriptional regulator, LysR family | -1.1 | |
| Uridine 5-monophosphate disodium salt | Atu2224 | aldehyde dehydrogenase | -2.4 | |
| Uridine 5-monophosphate disodium salt | Atu4567 | ROK family transcriptional regulator | -1.4 | |
| Uridine 5-monophosphate disodium salt | Atu4576 | ROK family transcriptional regulator | -1.8 | |
| Xylitol | Atu0063 | ABC transporter, substrate binding protein (sugar) | -2.6 | |
| Xylitol | Atu0064 | ABC transporter, membrane spanning protein (sugar) | -3.1 | |
| Xylitol | Atu0065 | ABC transporter, nucleotide binding/ATPase protein (sugar) | -2.8 | |
| Xylitol | Atu0066 | putative kinase | +1.5 | |
| Xylitol | Atu0660 | hydrolase | -1.8 | |
| Xylitol | Atu0771 | cytochrome c oxidase subunit III | -1.6 | |
| Xylitol | Atu0981 | glutamate-ammonia-ligase adenylyltransferase | -1.6 | |
| Xylitol | Atu2378 | hypothetical protein | +1.4 | |
| Xylitol | Atu3532 | GntR family transcriptional regulator | +1.5 | |
| Xylitol | Atu3577 | transcriptional regulator | +3.1 | |
| Xylitol | Atu3815 | GntR family transcriptional regulator | +3.1 | |
| Xylitol | Atu3878 | transcriptional regulator | +4.6 | |
| Xylitol | Atu4029 | gluconolactonase | +4.2 | |
| Xylitol | Atu4030 | sugar ABC transporter permease | -1.7 | |
| Xylitol | Atu4031 | sugar ABC transporter permease | -1.7 | |
| Xylitol | Atu4032 | sugar ABC transporter ATPase | -1.9 | |
| Xylitol | Atu4033 | sugar ABC transporter substrate-binding protein | -1.6 | |
| Xylitol | Atu4034 | two component sensor kinase | -1.4 | |
| Xylitol | Atu4035 | two component response regulator | -1.5 | |
| Xylitol | Atu4128 | GMC type oxidoreductase | -1.0 | |
| Xylitol | Atu4319 | AraC family transcriptional regulator | -1.0 | Yes |
| Xylitol | Atu4323 | ribitol 2-dehydrogenase | +5.4 | |
| Xylitol | Atu4451 | mannitol 2-dehydrogenase | +3.1 | Yes |
| Xylitol | Atu4482 | xylulokinase | -6.1 | Yes |
| Xylitol | Atu4702 | GntR family transcriptional regulator | -2.0 | |
| Xylitol | Atu4743 | LacI family transcriptional regulator | +2.1 | |
| Xylitol | Atu8118 | putative universal stress protein | -1.5 | |
| Xylobiose | Atu0405 | long-chain-fatty-acid-CoA-ligase | variable | |
| Xylobiose | Atu1522 | transcriptional regulator, LacI family | +1.1 | |
| Xylobiose | Atu3236 | sugar ABC transporter ATPase | -4.9 | |
| Xylobiose | Atu3237 | sugar ABC transporter permease | -6.9 | Yes |
| Xylobiose | Atu3238 | sugar ABC transporter permease | -6.5 | Yes |
| Xylobiose | Atu3239 | sugar ABC transporter substrate-binding protein | -5.3 | Yes |
| Xylobiose | Atu3240 | ROK family transcriptional regulator | -6.7 | |
| Xylobiose | Atu3241 | dehydrogenase | -6.2 | Yes |
| Xylobiose | Atu3242 | hypothetical protein | -6.3 | Yes |
| Xylobiose | Atu4481 | LacI family transcriptional regulator | -6.1 | |
| Xylobiose | Atu4482 | xylulokinase | -6.9 | Yes |
| Xylobiose | Atu4483 | xylose isomerase | -7.4 | Yes |
| Xylobiose | Atu5443 | TetR family transcriptional regulator | -1.6 | |
| a-Ketoglutaric acid disodium salt hydrate | Atu0626 | alcohol dehydrogenase | -1.7 | |
| a-Ketoglutaric acid disodium salt hydrate | Atu0664 | transcriptional regulator, LysR family | -1.1 | |
| a-Ketoglutaric acid disodium salt hydrate | Atu2224 | aldehyde dehydrogenase | -1.9 | Yes |
| a-Ketoglutaric acid disodium salt hydrate | Atu4530 | TetR family transcriptional regulator | +1.9 | |
| alpha-Lactose | Atu0786 | peptidase, family M16 | +1.3 | |
| alpha-Lactose | Atu1113 | dehydrogenase | -2.5 | |
| alpha-Lactose | Atu3147 | oxidoreductase | -3.1 | |
| alpha-Lactose | Atu3148 | sugar ABC transporter ATPase | -2.9 | |
| alpha-Lactose | Atu3149 | sugar ABC transporter permease | -2.8 | |
| alpha-Lactose | Atu3150 | sugar ABC transporter permease | -2.8 | |
| alpha-Lactose | Atu3151 | sugar ABC transporter substrate-binding protein | -3.0 | |
| alpha-Lactose | Atu3152 | AraC family transcriptional regulator | -2.9 | |
| alpha-Lactose | Atu3347 | hypothetical protein | -2.0 | |
| alpha-Lactose | Atu3348 | hypothetical protein | -2.2 | |
| alpha-Lactose | Atu4099 | hypothetical protein | +1.5 | |
| alpha-Lactose | Atu4176 | hypothetical protein | -1.4 | |
| alpha-Lactose | Atu4485 | beta-glucosidase | -2.4 | |
| anthranilamide | Atu0626 | alcohol dehydrogenase | -1.7 | |
| anthranilamide | Atu0663 | hypothetical protein | -1.0 | |
| anthranilamide | Atu0664 | transcriptional regulator, LysR family | -1.3 | |
| anthranilamide | Atu2224 | aldehyde dehydrogenase | -3.2 | |
| m-Inositol | Atu0207 | transcriptional regulator, LysR family | -6.1 | Yes |
| m-Inositol | Atu0283 | hypothetical protein | -1.2 | |
| m-Inositol | Atu0291 | hypothetical protein | -1.5 | |
| m-Inositol | Atu0405 | long-chain-fatty-acid-CoA-ligase | -1.7 | |
| m-Inositol | Atu0636 | hypothetical protein | -1.4 | |
| m-Inositol | Atu0807 | metallo-beta-lactamase superfamily protein | -1.2 | |
| m-Inositol | Atu1217 | cysteine synthase | -1.1 | |
| m-Inositol | Atu1372 | hypothetical protein | -2.8 | |
| m-Inositol | Atu1572 | hydrolase | -1.7 | |
| m-Inositol | Atu1676 | para-aminobenzoate synthase component I | -1.2 | |
| m-Inositol | Atu1729 | putative molybdenum cofactor biosynthesis protein | -1.6 | |
| m-Inositol | Atu1994 | acyl-CoA hydrolase | -2.2 | |
| m-Inositol | Atu2184 | transcriptional regulator, AsnC family | -1.4 | |
| m-Inositol | Atu2487 | pyridoxamine kinase | -1.0 | |
| m-Inositol | Atu2493 | NAD(P)+ transhydrogenase | -1.8 | |
| m-Inositol | Atu2494 | NAD(P)+ transhydrogenase beta chain | -1.9 | |
| m-Inositol | Atu3370 | sugar ABC transporter permease | -2.7 | Yes |
| m-Inositol | Atu3371 | sugar ABC transporter ATPase | -2.6 | Yes |
| m-Inositol | Atu3372 | sugar ABC transporter substrate-binding protein | -2.5 | Yes |
| m-Inositol | Atu4477 | TetR family transcriptional regulator | -2.3 | |
| m-Inositol | Atu4509 | hypothetical protein | -4.2 | Yes |
| m-Inositol | Atu4510 | hypothetical protein | -4.3 | Yes |
| m-Inositol | Atu4511 | acetolactate synthase | -3.6 | Yes |
| m-Inositol | Atu4512 | myo-inositol catabolism IolC protein | -3.2 | Yes |
| m-Inositol | Atu4875 | hypothetical protein | +1.3 | |
| methyl 3-keto-a-D-glucopyranoside | Atu3240 | ROK family transcriptional regulator | +1.7 | |
| methyl 3-keto-a-D-glucopyranoside | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -4.2 | Yes |
| methyl 3-keto-a-D-glucopyranoside | Atu3339 | trehalose/maltose ABC transporter permease | -4.0 | Yes |
| methyl 3-keto-a-D-glucopyranoside | Atu3340 | trehalose/maltose ABC transporter permease | -4.1 | |
| methyl 3-keto-a-D-glucopyranoside | Atu3341 | trehalose/maltose ABC transporter ATPase | -3.0 | |
| methyl 3-keto-a-D-glucopyranoside | Atu3342 | trehalose utilization-like protein | -5.2 | |
| methyl 3-keto-a-D-glucopyranoside | Atu4369 | sugar ABC transporter substrate-binding protein | -1.5 | |
| methyl 3-keto-a-D-glucopyranoside | Atu4370 | sugar ABC transporter ATPase | -1.2 | |
| methyl 3-keto-a-D-glucopyranoside | Atu4372 | ribose ABC transporter permease | -1.4 | |
| methyl 3-keto-a-D-glucopyranoside | Atu4373 | LacI family transcriptional regulator | -1.2 | |
| methyl 3-keto-a-D-glucopyranoside | Atu4374 | hypothetical protein | -1.8 | |
| methyl 3-keto-a-D-glucopyranoside | Atu4375 | hypothetical protein | -2.0 | |
| methyl-alpha-D-xylopyranoside | Atu3234 | NAD binding oxidoreductase | -2.4 | |
| methyl-alpha-D-xylopyranoside | Atu3235 | hypothetical protein | -2.1 | |
| methyl-alpha-D-xylopyranoside | Atu3240 | ROK family transcriptional regulator | -1.4 | |
| methyl-alpha-D-xylopyranoside | Atu4128 | GMC type oxidoreductase | -1.2 | |
| methyl-alpha-D-xylopyranoside | Atu4363 | hypothetical protein | -1.9 | |
| methyl-alpha-D-xylopyranoside | Atu4364 | LacI family transcriptional regulator | +13.7 | |
| methyl-alpha-D-xylopyranoside | Atu4481 | LacI family transcriptional regulator | -1.8 | |
| methyl-alpha-D-xylopyranoside | Atu4482 | xylulokinase | -3.8 | |
| methyl-alpha-D-xylopyranoside | Atu4483 | xylose isomerase | -3.7 | |
| methyl-beta-D-xylopyranoside | Atu0405 | long-chain-fatty-acid-CoA-ligase | variable | |
| methyl-beta-D-xylopyranoside | Atu3234 | NAD binding oxidoreductase | -2.5 | |
| methyl-beta-D-xylopyranoside | Atu3235 | hypothetical protein | -2.3 | Yes |
| methyl-beta-D-xylopyranoside | Atu3236 | sugar ABC transporter ATPase | -2.0 | |
| methyl-beta-D-xylopyranoside | Atu3237 | sugar ABC transporter permease | -2.5 | |
| methyl-beta-D-xylopyranoside | Atu3238 | sugar ABC transporter permease | -1.9 | |
| methyl-beta-D-xylopyranoside | Atu3239 | sugar ABC transporter substrate-binding protein | -2.1 | |
| methyl-beta-D-xylopyranoside | Atu3240 | ROK family transcriptional regulator | -7.1 | Yes |
| methyl-beta-D-xylopyranoside | Atu3241 | dehydrogenase | -7.3 | Yes |
| methyl-beta-D-xylopyranoside | Atu3242 | hypothetical protein | -7.7 | Yes |
| methyl-beta-D-xylopyranoside | Atu3751 | hypothetical protein | -1.2 | Yes |
| methyl-beta-D-xylopyranoside | Atu4481 | LacI family transcriptional regulator | -5.9 | |
| methyl-beta-D-xylopyranoside | Atu4482 | xylulokinase | -7.9 | Yes |
| methyl-beta-D-xylopyranoside | Atu4483 | xylose isomerase | -7.7 | Yes |
| methyl-beta-L-arabinopyranoside | Atu1113 | dehydrogenase | -2.4 | |
| methyl-beta-L-arabinopyranoside | Atu2345 | hypothetical protein | -1.8 | |
| methyl-beta-L-arabinopyranoside | Atu2348 | sugar binding protein | -1.5 | |
| methyl-beta-L-arabinopyranoside | Atu2719 | aldose epimerase | -1.6 | |
| methyl-beta-L-arabinopyranoside | Atu3815 | GntR family transcriptional regulator | -2.2 | |
| methyl-beta-L-arabinopyranoside | Atu4659 | AraC family transcriptional regulator | -1.3 | |
| methyl-beta-L-arabinopyranoside | Atu4660 | alpha-galactosidase | -1.8 | |
| p-Coumaric acid | Atu0663 | hypothetical protein | -1.4 | |
| p-Coumaric acid | Atu0807 | metallo-beta-lactamase superfamily protein | -3.7 | |
| p-Coumaric acid | Atu1086 | MFS permease | -2.8 | |
| p-Coumaric acid | Atu1087 | secretion protein | -2.8 | |
| p-Coumaric acid | Atu1415 | 3-hydroxyacyl-CoA dehydrogenase type II | -2.0 | |
| p-Coumaric acid | Atu1421 | hypothetical protein | -4.4 | |
| p-Coumaric acid | Atu3329 | beta alanine--pyruvate transaminase | +1.4 | |
| p-Coumaric acid | Atu4538 | 3-carboxy-cis,cis-muconate cycloisomerase | -3.6 | |
| p-Coumaric acid | Atu4539 | protocatechuate 3,4-dioxygenase alpha chain | -1.9 | Yes |
| p-Coumaric acid | Atu4542 | beta-ketoadipate enol-lactone hydrolase | -2.4 | Yes |
| p-Coumaric acid | Atu4544 | 4-hydroxybenzoate 3-monooxygenase | -1.5 | Yes |
| p-Coumaric acid | Atu4545 | AraC family transcriptional regulator | -1.6 | Yes |
| p-Coumaric acid | Atu4547 | 3-oxoadipate CoA-transferase subunit A | -2.2 | |
| p-Coumaric acid | Atu4548 | 3-oxoadipate CoA-transferase subunit B | -2.5 | Yes |
| p-Coumaric acid | Atu4549 | beta-ketoadipyl CoA thiolase | -2.9 | Yes |
| palatinose hydrate | Atu1572 | hydrolase | -1.6 | |
| palatinose hydrate | Atu3338 | trehalose/maltose ABC transporter substrate-binding protein | -5.0 | Yes |
| palatinose hydrate | Atu3339 | trehalose/maltose ABC transporter permease | -5.1 | Yes |
| palatinose hydrate | Atu3340 | trehalose/maltose ABC transporter permease | -6.4 | Yes |
| palatinose hydrate | Atu3341 | trehalose/maltose ABC transporter ATPase | -4.8 | Yes |
| palatinose hydrate | Atu3342 | trehalose utilization-like protein | -6.9 | |
| palatinose hydrate | Atu3343 | trehalose utilization-like protein | -6.3 | Yes |
| sarcosine | Atu0124 | hypothetical protein | +1.4 | |
| sarcosine | Atu0479 | ABC transporter, substrate binding protein (amino acid) | variable | |
| sarcosine | Atu0626 | alcohol dehydrogenase | -1.1 | |
| sarcosine | Atu0664 | transcriptional regulator, LysR family | -1.3 | |
| sarcosine | Atu0931 | penicillin binding protein | +2.7 | |
| sarcosine | Atu1499 | penicillin binding protein | +2.0 | |
| sarcosine | Atu1759 | L-serine dehydratase | -1.5 | |
| sarcosine | Atu2135 | transcriptional regulator, TetR family | +2.2 | |
| sarcosine | Atu2224 | aldehyde dehydrogenase | -1.7 | |
| sarcosine | Atu3780 | hypothetical protein | +2.4 | |
| sarcosine | Atu3886 | lysophospholipase | variable | |
| sarcosine | Atu4309 | AraC family transcriptional regulator | -2.8 | |
| sarcosine | Atu4310 | sarcosine oxidase beta subunit | -3.1 | |
| sarcosine | Atu4311 | sarcosine oxidase delta subunit | -3.0 | |
| sarcosine | Atu4312 | sarcosine oxidase alpha subunit | -2.9 | |
| sarcosine | Atu4313 | sarcosine oxidase gamma subunit | -2.9 | |
| sarcosine | Atu4314 | serine hydroxymethyltransferase | -2.3 | |
| sarcosine | Atu4498 | hypothetical protein | +2.1 | |
| sarcosine | Atu4499 | hypothetical protein | variable | |
| trans-aconitic acid | Atu4260 | ABC transporter permease | -2.2 | |
| trans-aconitic acid | Atu4261 | ABC transporter permease | -2.5 | |
| trans-aconitic acid | Atu4262 | ABC transporter substrate binding protein | -2.2 | |
| trans-aconitic acid | Atu4263 | hypothetical protein | -2.2 | Yes |
| trans-aconitic acid | Atu4264 | LysR family transcriptional regulator | -2.2 | Yes |