Fitness data for QEN71_RS24230 in Paraburkholderia sabiae LMG 24235

RNA polymerase sigma factor
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

All 60 fitness values, sorted by group and condition


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group condition fitness t score  
carbon source 2-Deoxy-D-Ribose (C) -0.0 -0.1 compare
2-Deoxy-D-Ribose (C) +0.1 +0.7 compare
casaminos (C) -0.2 -1.2 compare
casaminos (C) -0.1 -0.8 compare
D,L-Malic Acid (C) -0.2 -1.4 compare
D,L-Malic Acid (C) -0.0 -0.1 compare
D-Fructose (C) +0.1 +0.6 compare
D-Fructose (C) -0.1 -0.8 compare
D-Glucose (C) -0.1 -0.6 compare
D-Glucose (C) -0.2 -1.2 compare
D-Sorbitol (C) -0.2 -1.3 compare
D-Sorbitol (C) -0.0 -0.3 compare
D-Xylose (C) +0.0 +0.3 compare
Fumaric (C) -0.0 -0.2 compare
Fumaric (C) +0.0 +0.2 compare
L-Aspartic Acid (C) -0.1 -0.8 compare
L-Aspartic Acid (C) -0.1 -0.8 compare
L-Glutamic (C) +0.0 +0.3 compare
L-Glutamic (C) -0.1 -0.9 compare
L-Histidine (C) +0.1 +0.6 compare
L-Histidine (C) +0.0 +0.4 compare
L-Leucine (C) +0.1 +0.5 compare
L-Leucine (C) -0.1 -0.4 compare
L-Rhamnose (C) -0.1 -0.5 compare
L-Rhamnose (C) -0.0 -0.3 compare
D,L-Lactate (C) -0.0 -0.2 compare
D,L-Lactate (C) +0.1 +0.5 compare
succinate (C) -0.1 -1.1 compare
succinate (C) +0.0 +0.3 compare
coculture Psabiae_ML3b with MT80 -0.0 -0.4 compare
Psabiae_ML3b with MT81 +0.0 +0.2 compare
in planta Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.0 -0.3 compare
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -1.3 compare
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 -0.9 compare
Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 +1.8 compare
Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.0 -0.0 compare
motility Motility_inner_sample -0.0 -0.2 compare
Motility_inner_sample -0.1 -1.1 compare
Motility_inner_sample -0.0 -0.3 compare
Motility_inner_sample -0.1 -0.5 compare
Motility_inner_sample_with_outgrowth -0.0 -0.2 compare
Motility_inner_sample_with_outgrowth -0.2 -1.5 compare
Motility_outer_sample -0.2 -1.3 compare
Motility_outer_sample -0.4 -2.7 compare
Motility_outer_sample_with_outgrowth -0.3 -2.2 compare
Motility_outer_sample_with_outgrowth -0.3 -2.2 compare
Motility_outer_sample_with_outgrowth -0.2 -1.1 compare
Motility_outer_sample_with_outgrowth -0.3 -2.0 compare
stress LB_noSalt with Cobalt chloride 0.25 mM -0.2 -1.3 compare
LB_noSalt with Cobalt chloride 0.25 mM +0.1 +0.6 compare
LB_noSalt with Chloride 200 mM +0.2 +1.1 compare
LB_noSalt with Chloride 200 mM +0.0 +0.4 compare
LB_noSalt with Chloride 200 mM +0.1 +1.0 compare
LB_noSalt with Chloride 200 mM +0.0 +0.2 compare
LB_noSalt with Zinc 0.5 mM -0.1 -0.7 compare
LB_noSalt with Zinc 0.5 mM -0.1 -0.5 compare
supernatant Filtered_supernatant_MT183_in_LB +0.1 +0.5 compare
Filtered_supernatant_MT71_in_LB -0.0 -0.2 compare
Filtered_supernatant_MT80_in_LB -0.1 -1.1 compare
Filtered_supernatant_MT81_in_LB -0.1 -0.4 compare