Fitness data for PP_5690 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source D-Glucose (C) -1.1 -2.5 compare
carbon source D-Glucose (C); with MOPS -0.9 -1.8 compare
pH Valerolactone (C) pH 6.5 -0.8 -3.1 compare
carbon source 4-Methyl-2-oxopentanoic (C) -0.8 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -2.7 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.7 -3.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6 -2.0 compare
temperature Growth at 30C; with MOPS -0.6 -1.2 compare
nitrogen source nitrogen source nitrite 1mM -0.6 -1.8 compare
nitrogen source nitrogen source nitrate 20mM +0.6 +2.5 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.6 +2.0 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.6 +2.4 compare
nitrogen source 2,6-diaminopimelic (N) +0.6 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +1.9 compare
phage P. putida Missley MOI 0.1 +0.7 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.7 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +2.2 compare
nitrogen source Ammonium chloride (N); with MOPS +0.7 +2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +2.0 compare