Fitness data for PP_5621 in Pseudomonas putida KT2440

protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.7)


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group condition fitness t score  
carbon source D-Glucose (C) -6.6 -2.7 compare
phage P. putida Sci small MOI 0.1 -4.6 -1.7 compare
temperature shift Temperature shift 10_to_25; with MOPS -3.3 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.7 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.7 -2.1 compare
nitrogen source D-2-Aminobutyric (N) -2.6 -1.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -2.6 -2.0 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -2.4 -1.1 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -2.3 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.3 -1.3 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -2.2 -3.0 compare
phage P. putida Sci Big MOI 0.1 -2.1 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.0 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.9 -1.8 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -1.9 -2.6 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -1.9 -2.7 compare
nitrogen source NAG (N); with MOPS -1.8 -1.3 compare
temperature shift Temperature shift 30_to_25 -1.8 -1.4 compare
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -1.8 -3.6 compare
temperature shift Temperature shift 30_to_21; with MOPS -1.7 -1.9 compare