Fitness data for PP_5620 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source Propandiamine (N) -0.6 -2.1 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.8 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.5 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.9 compare
carbon source Trisodium citrate (C) +0.5 +1.7 compare
nitrogen source nitrogen source nitrite 0.5mM +0.5 +1.5 compare
carbon source carbon source 3-O-methyl-glucose 10 mM +0.5 +2.0 compare
pH Growth at pH6 and (C) Trisodium citrate +0.5 +1.9 compare
carbon source D-Fructose (C) +0.5 +2.1 compare
nitrogen source NAG (N); with MOPS +0.5 +1.5 compare
pH Growth at pH7 and (C) D-Glucose +0.5 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.4 compare
no stress control Growth with no stress +0.6 +1.8 compare
phage P. putida Sci Big MOI 0.1 +0.6 +1.9 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +2.6 compare
nitrogen source no extra (N); with MOPS +0.7 +2.7 compare
nitrogen source D-2-Aminobutyric (N) +0.8 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.9 +3.2 compare
phage P. putida PUT 7 MOI 1 +0.9 +5.0 compare
phage P. putida Missley MOI 0.1 +1.0 +5.4 compare