Fitness data for PP_5565 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
micoeukaryotes Tetrahymena sp., Mixed culture-2 -2.2 -3.3 compare
nitrogen source NAG (N); with MOPS -1.1 -2.1 compare
phage P. putida Sci small MOI 0.1 -1.0 -1.3 compare
nitrogen source D-2-Aminobutyric (N) -1.0 -1.8 compare
temperature Growth at 25C; with MOPS -0.9 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -1.3 compare
nitrogen source nitrogen source nitrite 0.5mM -0.8 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -1.3 compare
carbon source Valerolactam 10 mM (C) -0.7 -2.7 compare
nitrogen source Urea (N) -0.7 -2.4 compare
nitrogen source Urea (N); with MOPS -0.7 -1.0 compare
phage P. put PUT 10 MOI 10 -0.7 -2.3 compare
toxin pUC18_phdP1_pSU18T_docP1 -0.6 -1.8 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.6 -1.8 compare
phage P. put South MOI 10 +0.6 +1.5 compare
carbon source Tween 20 (C) +0.6 +1.7 compare
stress R2A with Fusaric 120 ug/mL +0.8 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.9 +3.0 compare
pH Growth at pH6 and (C) Trisodium citrate +0.9 +2.6 compare