Fitness data for PP_5561 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: FIG00509740: hypothetical protein
KEGG: type VI secretion system protein ImpM

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -1.6 -2.2 compare
nitrogen source 2,6-diaminopimelic (N) -1.5 -1.9 compare
carbon source Valerolactone (C) -1.2 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -1.9 compare
nitrogen source no extra (N); with MOPS -0.9 -2.0 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.8 -2.0 compare
carbon source carbon source D-Glucose 55.5 mM -0.8 -1.7 compare
carbon source Tween 20 (C) -0.8 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 -2.8 compare
nitrogen source Urea (N) -0.7 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.5 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.7 -2.6 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.7 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.7 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 +1.4 compare
pH Growth at pH9 and (C) Trisodium citrate +0.7 +2.8 compare
nitrogen source NAG (N); with MOPS +0.8 +1.9 compare
carbon source 4-Methyl-2-oxopentanoic (C) +0.9 +2.2 compare
nitrogen source 2,6-diaminopimelic (N) +1.0 +3.3 compare