Fitness data for PP_5546 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.6)


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group condition fitness t score  
carbon source 3-methyl-1-butanol 0.25 vol% (C) -6.2 -2.4 compare
temperature shift Temperature shift 30_to_34; with MOPS -3.4 -3.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -3.0 -2.2 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -2.9 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.4 -2.7 compare
stress R2A with Fusaric 480 ug/mL -2.3 -2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.3 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.2 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.0 -1.6 compare
carbon source D-Glucose (C) -2.0 -1.8 compare
stress R2A with Fusaric 120 ug/mL -1.9 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.9 -1.5 compare
lb outgrowth control more dilute start LB outgrowth control more dilute start -1.8 -2.3 compare
nitrogen source no extra (N) -1.8 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.7 -1.7 compare
nitrogen source nitrite (N) -1.7 -1.7 compare
lb outgrowth control more dilute start LB outgrowth control more dilute start -1.6 -3.2 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -1.6 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +1.7 +2.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +3.1 +2.6 compare