Fitness data for PP_5522 in Pseudomonas putida KT2440

protein of unknown function
SEED: hypothetical protein Pfl_5213

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.8 -1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.7 compare
temperature shift Temperature shift 30_to_25 -0.7 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.7 -1.6 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.7 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 +2.1 compare
carbon source carbon source 3-O-methyl-glucose 10 mM +0.7 +1.6 compare
carbon source carbon source D-Glucose 55.5 mM +0.7 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.2 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.8 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +2.4 compare
pH pH 8 +0.9 +2.2 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.9 +2.6 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.9 +2.3 compare
carbon source carbon source 4-vinylphenol 0.1 mM +1.0 +2.4 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +1.1 +3.0 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +1.1 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.7 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.2 +2.3 compare