Fitness data for PP_5464 in Pseudomonas putida KT2440

protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source NAG (N); with MOPS -0.8 -2.2 compare
carbon source D-Glucose (C) -0.5 -1.9 compare
carbon source L-Alanine (C) -0.5 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -2.0 compare
pH Growth at pH6 and (C) Trisodium citrate +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.1 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5 +2.0 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.5 +3.0 compare
nitrogen source D-2-Aminobutyric (N) +0.5 +1.8 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.5 +3.1 compare
pH Growth at pH6 and (C) D-Glucose +0.5 +2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +2.2 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +0.5 +2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.7 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.6 +2.9 compare
phage P. putida Missley MOI 0.1 +0.6 +3.3 compare
phage P. putida PUT 7 MOI 1 +0.8 +3.9 compare
phage P. putida Sci small MOI 0.1 +0.9 +4.2 compare
phage P. putida Sci small MOI 0.1 +0.9 +3.9 compare