Fitness data for PP_5403 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
no stress control Growth with no stress -0.7 -2.7 compare
carbon source ferulate (C); with MOPS -0.6 -1.8 compare
carbon source D-Glucose (C) -0.5 -1.8 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.5 -1.7 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.5 -2.5 compare
nitrogen source NAG (N); with MOPS -0.5 -1.0 compare
carbon source butyrate (C) -0.5 -2.1 compare
nitrogen source Ammonium chloride and TNT (N) -0.5 -2.5 compare
carbon source Heptanoic (C) -0.5 -2.7 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.7 compare
phage P. putida Sci small MOI 0.1 +0.5 +1.6 compare
micoeukaryotes C.elegans, mixed culture-2 +0.5 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.5 +1.8 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.5 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.1 compare
phage P. putida Missley MOI 0.1 +0.6 +3.0 compare
phage P. putida PUT 7 MOI 1 +0.7 +3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.1 compare