Fitness data for PP_5386 in Pseudomonas putida KT2440

Probable copper RND efflux membrane fusion protein, CzcB family
SEED: Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family
KEGG: Cu(I)/Ag(I) efflux system membrane protein CusB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source D-Glucose (C) -0.9 -6.6 compare
nitrogen source Urea (N); with MOPS -0.7 -2.9 compare
carbon source D-Glucose (C) -0.6 -4.7 compare
nitrogen source 2,6-diaminopimelic (N) -0.4 -2.0 compare
pH Growth at pH9 and (C) Trisodium citrate -0.4 -2.1 compare
pH Growth at pH7 and (C) D-Glucose -0.3 -1.4 compare
pH Growth at pH6 and (C) Trisodium citrate -0.3 -1.5 compare
carbon source Ethanol (C) -0.3 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 +1.5 compare
carbon source Crotonic (C) +0.3 +1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 +2.3 compare
phage P. putida PUT 7 MOI 1 +0.4 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.8 compare
phage P. putida Missley MOI 0.1 +0.5 +2.9 compare