Fitness data for PP_5341 in Pseudomonas putida KT2440

putrescine-binding periplasmic protein
SEED: Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2)
KEGG: putrescine transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
nitrogen source 6-aminocaproic (N) -0.5 -4.0 compare
nitrogen source 6-aminocaproic (N) -0.5 -4.0 compare
carbon source 1,3-Butandiol (C) -0.3 -2.0 compare
phage PUT8 MOI 0.1 -0.3 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -1.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.2 -1.2 compare
carbon source Nonanoic (C) -0.2 -1.6 compare
phage P. putida Sci small MOI 0.1 -0.2 -1.2 compare
carbon source Delta-Nonalactone (C) -0.2 -1.6 compare
carbon source acetate (C) +0.2 +1.3 compare
nitrogen source D-2-Aminobutyric (N) +0.2 +1.4 compare
pH Growth at pH7 and (C) Trisodium citrate +0.2 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +1.6 compare
carbon source 3-methyl-3-buten-1-ol 0.1 vol% (C) +0.2 +2.1 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.3 +1.8 compare
carbon source ferulate (C); with MOPS +0.3 +1.7 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.3 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.6 compare