Fitness data for PP_5295 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Protein YicC

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.7)


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group condition fitness t score  
no stress control Growth with no stress -4.9 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -4.4 -1.8 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -3.3 -2.3 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -3.1 -2.2 compare
pH Growth at pH6 and (C) D-Glucose -3.1 -1.8 compare
nitrogen source D-2-Aminobutyric (N) -3.0 -1.5 compare
temperature shift Temperature shift 30_to_25; with MOPS -2.5 -1.8 compare
nitrogen source nitrogen source nitrite 1mM -2.5 -1.8 compare
carbon source D-Glucose (C) -2.4 -1.5 compare
nitrogen source 2,6-diaminopimelic (N) -2.1 -0.9 compare
nitrogen source nitrogen source nitrite 0.5mM -2.1 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.1 -2.1 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -2.0 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.9 -1.4 compare
no stress control Growth with no stress -1.9 -1.2 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.8 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.8 -1.4 compare
carbon source L-Valine (C) -1.8 -2.7 compare
nitrogen source nitrogen source nitrite 0.5mM -1.8 -1.6 compare
carbon source L-Valine (C) -1.7 -3.5 compare