Fitness data for PP_5263 in Pseudomonas putida KT2440

GGDEF domain protein
SEED: GGDEF domain/EAL domain protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
nitrogen source NAG (N); with MOPS -1.1 -1.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -2.9 compare
carbon source acetate (C) -0.8 -2.2 compare
phage P. putida Sci small MOI 0.1 -0.8 -1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 -1.7 compare
pH Growth at pH6 and (C) D-Glucose -0.7 -1.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.6 -3.1 compare
carbon source Lignin Monomers (C) -0.6 -2.2 compare
pH pH 8 +0.6 +1.5 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.7 +2.0 compare
nitrogen source Ammonium chloride (N) +0.7 +3.1 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.7 +2.1 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.7 +1.6 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.8 +2.2 compare
pH Valerolactone (C) pH 6.5 +0.8 +4.0 compare
stress Geraniol 1 vol% +0.9 +5.4 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.9 +2.4 compare
pH pH 6 +0.9 +2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 +4.5 compare