Fitness data for PP_5250 in Pseudomonas putida KT2440

proline-specific outer membrane porin D
SEED: Outer membrane porin, OprD family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source D-2-Aminobutyric (N) -0.4 -2.0 compare
carbon source ferulate (C); with MOPS -0.4 -1.7 compare
carbon source Crotonic (C) -0.4 -2.1 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.5 compare
temperature shift Temperature shift 30_to_4; with MOPS +0.4 +3.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.7 compare
carbon source carbon source D-Glucose 55.5 mM +0.5 +1.8 compare
carbon source ferulate (C); with MOPS +0.5 +1.6 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM +0.5 +2.2 compare
pH pH 4 +0.5 +2.2 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.5 +2.5 compare
pH Growth at pH6 and (C) D-Glucose +0.5 +2.2 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.5 +2.7 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.6 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6 +2.5 compare
pH pH 9 +0.6 +2.9 compare
pH pH 8 +0.6 +3.1 compare