Fitness data for PP_5190 in Pseudomonas putida KT2440

Type II secretion system protein
SEED: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
KEGG: general secretion pathway protein E

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source carbon source D-Glucose 55.5 mM -0.9 -1.9 compare
pH Growth at pH8 and (C) D-Glucose -0.8 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8 -1.8 compare
nitrogen source 2,6-diaminopimelic (N) -0.7 -2.6 compare
carbon source D-Lysine 10 mM (C) -0.7 -3.2 compare
nitrogen source Propiolactam (N) -0.7 -2.4 compare
carbon source Valerolactone (C) -0.7 -2.4 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.6 -1.9 compare
phage P. putida Missley MOI 0.1 -0.6 -1.6 compare
pH Growth at pH9 and (C) Trisodium citrate -0.6 -2.0 compare
nitrogen source Ammonium chloride (N) -0.6 -1.7 compare
phage P. putida Sci small MOI 0.1 -0.6 -1.6 compare
nitrogen source Urea (N) -0.6 -1.6 compare
pH pH 5 -0.6 -1.9 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.6 -2.1 compare
phage P. put PUT 10 MOI 10 +0.6 +3.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +1.6 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.7 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.7 +2.0 compare