Fitness data for PP_5162 in Pseudomonas putida KT2440

conserved exported protein of unknown function
SEED: Thiol-disulfide isomerase and thioredoxins

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.1)


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group condition fitness t score  
micoeukaryotes C.elegans, mixed culture-1 -2.2 -5.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.7 -2.6 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.5 -2.0 compare
micoeukaryotes C.elegans, mixed culture-2 -1.5 -3.6 compare
temperature LB_noSalt 37C -1.5 -3.9 compare
reactor_pregrowth Adaptation in M9 media timecourse 1; day 3 -1.4 -3.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.3 -2.0 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 -2.7 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.3 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.3 -2.6 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 -2.5 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -1.3 -2.7 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 -2.7 compare
pH pH 8 -1.2 -2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -1.9 compare
stress Geraniol 1 vol% -1.2 -4.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -2.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +1.2 +2.0 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +1.3 +2.1 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +1.9 +2.0 compare