Fitness data for PP_5145 in Pseudomonas putida KT2440

phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins)
KEGG: phosphotransferase system, enzyme I, PtsP

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 3.8)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -5.9 -13.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -5.8 -12.6 compare
dilutelb LB 0.1x with 55.5 mM D-Glucose -5.2 -23.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -4.9 -15.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.9 -12.2 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -4.1 -29.1 compare
carbon source 2,3-Butanediol (C) -4.1 -16.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.0 -12.5 compare
phage PUT8 MOI 0.1 -4.0 -19.7 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -3.9 -19.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.8 -10.3 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -3.8 -25.8 compare
nitrogen source D-2-Aminobutyric (N) -3.8 -21.1 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -3.8 -27.3 compare
nitrogen source L-Methionine (N) +4.0 +37.9 compare
carbon source 3-methyl-2-oxopentanoic (C) +4.3 +39.5 compare
carbon source Hexanoic (C) +4.9 +46.0 compare
carbon source propionate (C) +5.3 +45.5 compare
carbon source 4-Hydroxyvalerate (C) (40mM) +5.4 +48.6 compare
carbon source 4-Hydroxyvalerate (C) (40mM) +6.1 +54.3 compare