Fitness data for PP_5041 in Pseudomonas putida KT2440

glycogen phosphorylase
SEED: Glycogen phosphorylase (EC 2.4.1.1)
KEGG: starch phosphorylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.5 -5.8 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -1.2 -7.1 compare
reactor_pregrowth Adaptation in M9 media timecourse 4; day 3 -1.2 -7.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 -4.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 -5.8 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -1.0 -6.8 compare
reactor_pregrowth Adaptation in M9 media timecourse 4; day 2 -0.9 -6.7 compare
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -0.9 -6.1 compare
carbon source Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB -0.8 -5.3 compare
stress R2A with Fusaric 480 ug/mL -0.8 -4.2 compare
stress R2A with Fusaric 480 ug/mL -0.8 -4.2 compare
stress R2A with Fusaric 480 ug/mL -0.8 -4.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -3.5 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.7 -4.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.7 -4.2 compare
nitrogen source 2,6-diaminopimelic (N) +0.8 +4.8 compare
nitrogen source Propiolactam (N) +1.0 +6.6 compare
nitrogen source 2,6-diaminopimelic (N) +1.0 +5.1 compare
nitrogen source Propiolactam (N) +1.2 +8.8 compare