Fitness data for PP_5024 in Pseudomonas putida KT2440

Amino acid ABC transporter, periplasmic amino acid-binding protein
SEED: Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)
KEGG: putative glutamine transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source 3-methyl-1-butanol 0.1 vol% (C) -2.3 -6.7 compare
carbon source 3-methyl-1-butanol (C) -0.9 -4.7 compare
carbon source L-Lysine (C) -0.8 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7 -2.2 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.6 -1.9 compare
carbon source L-Leucine (C) +0.6 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.7 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +3.4 compare
nitrogen source D-2-Aminobutyric (N) +0.8 +3.6 compare
stress Growth with Chloride 500 mM; with MOPS +0.8 +3.7 compare
carbon source 4-Hydroxyvalerate (C) (40mM) +0.8 +5.2 compare
carbon source 4-Hydroxyvalerate (C) (40mM) +0.9 +5.4 compare
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.9 +5.0 compare
micoeukaryotes C.elegans, mixed culture-2 +0.9 +3.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.9 compare
micoeukaryotes C.elegans, mixed culture-1 +1.0 +6.1 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +1.2 +6.9 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 +1.3 +7.0 compare