Fitness data for PP_4952 in Pseudomonas putida KT2440

ATP-dependent RNA helicase, specific for 23S rRNA
SEED: ATP-dependent 23S rRNA helicase DbpA
KEGG: ATP-independent RNA helicase DbpA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.1)


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group condition fitness t score  
phage PUT8 MOI 0.1 -5.1 -1.9 compare
pH Growth at pH6 and (C) D-Glucose -4.2 -1.3 compare
carbon source Trisodium citrate (C) -4.2 -1.3 compare
nitrogen source nitrate (N) -4.1 -1.3 compare
nitrogen source NAG (N); with MOPS -4.1 -1.2 compare
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -3.2 -2.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.0 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.8 -1.2 compare
nitrogen source D-2-Aminobutyric (N) -2.8 -0.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.7 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.6 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.5 -1.5 compare
nitrogen source 2,6-diaminopimelic (N) -2.3 -1.0 compare
carbon source Valerolactone (C) -2.3 -1.4 compare
carbon source L-Leucine (C) -2.3 -2.2 compare
nitrogen source Ammonium chloride (N) -2.3 -1.5 compare
carbon source Glutaric (C) -2.2 -1.7 compare
carbon source Valerolactone (C) -2.2 -1.4 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.2 -1.7 compare
phage P. putida PUT10 MOI 10 -2.1 -2.9 compare