Fitness data for PP_4871 in Pseudomonas putida KT2440

putative lysine decarboxylase family protein
SEED: Lysine decarboxylase family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -3.9 -4.3 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -1.6 -3.3 compare
nitrogen source nitrite (N) -1.2 -2.1 compare
nitrogen source Ammonium chloride (N) -1.1 -1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 -1.9 compare
carbon source Valerolactone (C) -1.0 -1.6 compare
carbon source 4-Aminobutyric 10 mM (C) -0.9 -2.5 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -0.9 -2.6 compare
pH Growth at pH7 and (C) Trisodium citrate -0.9 -1.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -1.9 compare
nitrogen source no extra (N); with MOPS -0.9 -1.6 compare
carbon source Tween 20 (C) -0.9 -1.4 compare
carbon source Myristic (C) -0.9 -1.3 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.9 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 +1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.9 +2.5 compare
carbon source 1,3-Butandiol (C) +0.9 +2.9 compare
nitrogen source 2,6-diaminopimelic (N) +1.0 +2.9 compare
phage PUT 8 MOI 1 +1.1 +3.1 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +1.1 +3.0 compare