Fitness data for PP_4833 in Pseudomonas putida KT2440

SURF1 domain protein
SEED: Putative activity regulator of membrane protease YbbK
KEGG: hypothetical protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
nitrogen source nitrogen source nitrate 20mM -1.3 -3.5 compare
carbon source Trisodium citrate (C) -1.2 -2.7 compare
nitrogen source Ammonium chloride (N) -1.1 -2.8 compare
nitrogen source NAG (N); with MOPS -1.1 -1.8 compare
nitrogen source D-2-Aminobutyric (N) -1.0 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -2.8 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.9 -1.5 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.9 -2.3 compare
stress 3-methyl-1-butanol 0.4 vol% -0.9 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -1.3 compare
pH Growth at pH6 and (C) Trisodium citrate -0.8 -1.0 compare
carbon source acetate (C) -0.8 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.3 compare
carbon source 3-Hydroxydecanoic (C) -0.7 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.7 +2.3 compare
phage P. putida PUT 7 MOI 1 +0.7 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +2.2 compare
pH Growth at pH9 and (C) Trisodium citrate +0.8 +2.7 compare
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM +0.8 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.9 +1.3 compare