Fitness data for PP_4778 in Pseudomonas putida KT2440

23S rRNA pseudouridine 2457 synthase
SEED: Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase E

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.9)


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group condition fitness t score  
nitrogen source NAG (N); with MOPS -2.1 -1.5 compare
carbon source 2-Methylbutanoic (C) -1.8 -3.3 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.3 -1.9 compare
phage P. putida Sci Big MOI 0.1 -1.2 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.2 -2.6 compare
nitrogen source nitrate (N) -1.2 -1.0 compare
supernatant Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM -1.2 -3.6 compare
phage P. putida Missley MOI 0.1 -1.2 -2.7 compare
carbon source L-Proline (C) -1.1 -2.2 compare
pH pH 9 -1.0 -2.0 compare
nitrogen source Propandiamine (N) -1.0 -2.0 compare
nitrogen source D-2-Aminobutyric (N) -1.0 -1.3 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.9 -1.9 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.9 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -1.3 compare
pH D-Glucose (C) pH 7.5 +0.9 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.6 compare
nitrogen source nitrate (N) +1.0 +3.5 compare
stress Growth with Chloride 500 mM; with MOPS +1.0 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.6 compare