Fitness data for PP_4681 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Hypothetical protein YqcC (clustered with tRNA pseudouridine synthase C)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.3)


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group condition fitness t score  
nitrogen source D-2-Aminobutyric (N) -3.3 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.9 -2.9 compare
nitrogen source DL-2-Aminobutyric (N) -2.1 -2.4 compare
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -2.0 -2.1 compare
nitrogen source DL-2-Aminobutyric (N) -1.9 -2.6 compare
nitrogen source D-2-Aminobutyric (N) -1.8 -0.9 compare
pH Growth at pH9 and (C) Trisodium citrate -1.7 -1.8 compare
carbon source 3-methyl-2-oxopentanoic (C) -1.7 -2.9 compare
carbon source L-Valine (C) -1.6 -2.7 compare
carbon source L-Valine (C) -1.6 -5.2 compare
carbon source butyrate (C) -1.6 -1.8 compare
carbon source ferulate (C); with MOPS -1.6 -2.6 compare
pH Valerolactone (C) pH 6.5 -1.5 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 -2.5 compare
carbon source 3-Hydroxypropionate (C) -1.4 -1.7 compare
nitrogen source nitrogen source nitrate 5mM -1.4 -2.7 compare
temperature Growth at 30C; with MOPS -1.4 -1.8 compare
carbon source carbon source 4-vinylphenol 0.01 mM -1.4 -2.1 compare
carbon source 3-Hydroxypropionate (C) -1.3 -1.3 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +1.5 +2.7 compare