Fitness data for PP_4651 in Pseudomonas putida KT2440

Ubiquinol oxidase subunit I, cyanide insensitive
SEED: putative Cytochrome bd2, subunit I
KEGG: cytochrome bd-I oxidase subunit I

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.3 -11.6 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.3 -6.9 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 -4.4 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -5.0 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -4.9 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.7 -3.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -2.0 compare
phage P. putida PUT 7 MOI 1 -0.5 -2.5 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.5 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -2.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.5 -2.9 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM -0.4 -2.3 compare
carbon source carbon source Bisabolene 48.9 mM -0.4 -2.5 compare
pH pH 9 -0.4 -1.8 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.4 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.4 -2.6 compare
pH Valerolactone (C) pH 6.5 +0.4 +2.0 compare
pH Growth at pH6 and (C) Trisodium citrate +0.4 +2.1 compare
carbon source Trisodium citrate (C) +0.5 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.8 compare