Fitness data for PP_4644 in Pseudomonas putida KT2440

DNA repair enzyme
SEED: DNA repair protein RadA
KEGG: DNA repair protein RadA/Sms

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source carbon source D-Glucose 55.5 mM -1.0 -3.0 compare
pH Growth at pH7 and (C) Trisodium citrate -0.8 -2.3 compare
carbon source 3-methyl-1-butanol (C) -0.8 -3.9 compare
nitrogen source D-2-Aminobutyric (N) -0.8 -3.1 compare
pH pH 6 -0.7 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7 -2.2 compare
carbon source ferulate (C); with MOPS -0.6 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.7 compare
carbon source Octanoic (C) -0.5 -2.3 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -0.5 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -1.6 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.5 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -1.6 compare
lb outgrowth control LB outgrowth control -0.5 -3.0 compare
carbon source Lauric (C) +0.5 +2.5 compare
carbon source butyrate (C) +0.7 +2.8 compare
carbon source Valerolactone (C) +0.7 +2.7 compare