Fitness data for PP_4608 in Pseudomonas putida KT2440

RNA polymerase sigma-70 factor, ECF subfamily
SEED: FIG006045: Sigma factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)

group	condition	fitness	t score
pH	Growth at pH8 and (C) Trisodium citrate	-0.7	-2.6	compare
temperature	Growth at 10C; with MOPS	-0.5	-2.4	compare
pH	Growth at pH8 and (C) D-Glucose	-0.5	-1.5	compare
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.5	-2.6	compare
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-2.1	compare
phage	P. putida Sci Big MOI 0.1	-0.5	-1.6	compare
r2a control	R2A control	-0.5	-2.1	compare
carbon source	ferulate (C); with MOPS	+0.5	+1.6	compare
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.5	+1.7	compare
temperature	Growth at 25C	+0.5	+1.7	compare
carbon source	L-Glutamic (C)	+0.5	+2.4	compare
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5	+2.1	compare
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+2.6	compare
temperature shift	Temperature shift 30_to_25; with MOPS	+0.6	+2.1	compare
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	+0.6	+2.2	compare
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.6	+2.3	compare
temperature shift	Temperature shift 10_to_30; with MOPS	+0.7	+2.7	compare
nitrogen source	D-2-Aminobutyric (N)	+0.7	+2.5	compare
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+2.0	compare
temperature shift	Temperature shift 10_to_30; with MOPS	+0.8	+1.9	compare