Fitness data for PP_4601 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Hydrogen peroxide-inducible genes activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -2.4 compare
carbon source Vanillin (C) -0.9 -3.9 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -3.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.2 compare
carbon source Protocatechuic Acid (C) -0.7 -3.4 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -2.3 compare
carbon source ferulate (C); with MOPS -0.7 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -2.5 compare
carbon source Delta-Decalactone (C) -0.6 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.6 -1.6 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.6 +1.6 compare
nitrogen source NAG (N); with MOPS +0.6 +1.6 compare
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL +0.6 +2.3 compare
carbon source butyrate (C) +0.7 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.7 +2.9 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +2.1 compare
nitrogen source nitrate (N) +0.7 +2.2 compare