Fitness data for PP_4590 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Protein YcgL
KEGG: hypothetical protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
pH Growth at pH7 and (C) D-Glucose -1.5 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -3.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -2.9 compare
phage P. putida Sci small MOI 0.1 -0.8 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.5 compare
carbon source Acetate Carbon Source (20mM) -0.8 -3.3 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -0.8 -3.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.8 -2.1 compare
pH pH 9 -0.8 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.8 -3.2 compare
no phage control Time6-nophage -0.8 -3.6 compare
temperature Growth at 25C; with MOPS -0.8 -3.1 compare
nitrogen source NAG (N); with MOPS -0.8 -1.5 compare
phage moi 100 Time6-phageFRS -0.7 -3.0 compare
carbon source 2-Methylbutanoic (C) -0.7 -2.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -2.8 compare
carbon source D-Glucose (C); with MOPS +0.7 +2.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.8 +3.4 compare
pH Growth at pH7 and (C) Trisodium citrate +0.8 +3.5 compare