Fitness data for PP_4559 in Pseudomonas putida KT2440

peptide deformylase
SEED: Peptide deformylase (EC 3.5.1.88)
KEGG: peptide deformylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -1.2 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 -1.7 compare
stress Growth with Chloride 500 mM -0.9 -3.3 compare
carbon source Tween 20 (C) -0.8 -2.3 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.8 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -1.6 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.8 -2.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -2.1 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.7 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -1.7 compare
pH Growth at pH6 and (C) Trisodium citrate +0.8 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.1 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.8 +1.9 compare
pH pH 4 +0.9 +1.9 compare
pH pH 8 +1.0 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +2.4 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +1.0 +2.5 compare
pH pH 6 +1.1 +2.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 +2.3 compare