Fitness data for PP_4555 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: PhnB protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.5)


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group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -3.8 -2.6 compare
pH Growth at pH7 and (C) D-Glucose -3.3 -2.6 compare
pH Growth at pH9 and (C) Trisodium citrate -2.8 -2.4 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -2.6 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.6 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.6 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -2.4 -2.2 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -2.3 -2.7 compare
nitrogen source Urea (N); with MOPS -2.0 -1.3 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -1.8 -2.7 compare
pH Growth at pH8 and (C) D-Glucose -1.8 -2.4 compare
stress Growth with Chloride 200 mM -1.7 -1.9 compare
pH Growth at pH6 and (C) Trisodium citrate -1.7 -2.2 compare
temperature shift Temperature shift 10_to_30; with MOPS -1.6 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.6 -2.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.6 -1.7 compare
pH Growth at pH8 and (C) Trisodium citrate -1.5 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.5 -2.8 compare
carbon source L-Leucine (C) +1.5 +3.2 compare
nitrogen source D-2-Aminobutyric (N) +1.7 +4.6 compare