Fitness data for PP_4553 in Pseudomonas putida KT2440

RNA polymerase sigma-70 factor, ECF subfamily
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
nitrogen source Ammonium chloride (N); with MOPS -0.7 -2.8 compare
phage P. putida Sci Big MOI 0.1 -0.6 -2.0 compare
carbon source Octanoic (C) -0.6 -3.2 compare
pH Growth at pH7 and (C) D-Glucose -0.6 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -2.4 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.5 -2.2 compare
carbon source 1,3-Butandiol (C) -0.4 -1.5 compare
carbon source Valerolactone (C) -0.4 -1.7 compare
pH Growth at pH6 and (C) Trisodium citrate -0.4 -2.0 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -0.4 -2.3 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.4 -2.3 compare
carbon source 4-Methyl-2-oxopentanoic (C) -0.4 -1.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +1.4 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.4 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +2.1 compare
pH pH 4 +0.5 +1.9 compare
carbon source ferulate (C); with MOPS +0.5 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.6 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +4.0 compare