Fitness data for PP_4532 in Pseudomonas putida KT2440

ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis
SEED: ATP-dependent RNA helicase SrmB

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 3.0)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -5.3 -2.6 compare
carbon source Delta-Undecalactone (C) -5.2 -3.6 compare
carbon source 1,3-Butandiol (C) -5.1 -2.9 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -4.9 -2.8 compare
carbon source Valeric (C) -4.8 -2.6 compare
carbon source Delta-Decalactone (C) -4.8 -3.3 compare
carbon source Delta-Decalactone (C) -4.7 -3.2 compare
temperature shift Temperature shift 30_to_4 -4.4 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -4.3 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -4.2 -3.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -3.8 -3.6 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.6 -3.5 compare
stress 3-methyl-1-butanol 0.4 vol% -3.5 -2.4 compare
no stress control Growth with no stress -3.4 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.4 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -3.2 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -3.2 -3.2 compare
carbon source Delta-Nonalactone (C) -3.1 -2.1 compare
temperature Growth at 10C; with MOPS -3.1 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -3.0 -2.5 compare