Fitness data for PP_4522 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Transcriptional regulator GbuR

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source L-Arginine (C) -1.3 -9.2 compare
nitrogen source 4-Guanidinobutyric (N) -0.9 -7.2 compare
nitrogen source 4-Guanidinobutyric (N) -0.9 -7.0 compare
carbon source ferulate (C); with MOPS -0.5 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -2.3 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.4 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.3 compare
pH Growth at pH8 and (C) Trisodium citrate -0.4 -2.3 compare
nitrogen source nitrate (N) -0.4 -1.8 compare
pH Growth at pH6 and (C) Trisodium citrate -0.4 -1.7 compare
phage P. putida PUT 7 MOI 1 -0.3 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -2.4 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.3 -2.2 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.3 -2.0 compare
pH Growth at pH8 and (C) D-Glucose -0.3 -1.5 compare
nitrogen source no extra (N); with MOPS -0.3 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +1.8 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.4 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.7 compare