Fitness data for PP_4486 in Pseudomonas putida KT2440

lysine / arginine / ornithine ABC transporter - periplasmic binding protein
SEED: Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein
KEGG: arginine/ornithine transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source L-Arginine (C) -2.7 -11.6 compare
nitrogen source L-Arginine (N) -2.4 -8.3 compare
nitrogen source L-Arginine (N) -2.4 -13.0 compare
carbon source L-Lysine (C) -1.4 -4.2 compare
phage P. putida Sci small MOI 0.1 -0.8 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.2 compare
carbon source L-Valine (C) +0.6 +5.1 compare
nitrogen source nitrate (N) +0.7 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +2.6 compare
carbon source L-Isoleucine (C) +0.7 +4.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.8 +5.1 compare
carbon source L-Alanine (C) +1.5 +9.7 compare
micoeukaryotes Dictyostellum sp.mixed culture-1 +1.8 +9.7 compare
micoeukaryotes C.elegans, mixed culture-1 +2.2 +14.1 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 +2.2 +15.1 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 +2.3 +14.9 compare
nitrogen source DL-2-Aminobutyric (N) +2.6 +17.1 compare
nitrogen source DL-2-Aminobutyric (N) +2.6 +15.7 compare
micoeukaryotes C.elegans, mixed culture-2 +2.8 +15.6 compare