Fitness data for PP_4469 in Pseudomonas putida KT2440

ribose 1,5-bisphosphate phosphokinase
SEED: ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8)
KEGG: ribose 1,5-bisphosphokinase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
pH Growth at pH6 and (C) Trisodium citrate -1.2 -3.0 compare
no stress control Growth with no stress -0.8 -2.0 compare
temperature Growth at 25C -0.8 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8 -2.2 compare
phage PUT8 MOI 0.1 -0.8 -2.3 compare
phage P. putida Sci Big MOI 0.1 -0.7 -1.7 compare
pH Growth at pH6 and (C) Trisodium citrate -0.7 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.6 compare
phage PUT8 MOI 0.1 -0.6 -1.9 compare
carbon source ferulate (C); with MOPS -0.6 -1.4 compare
carbon source Delta-Nonalactone (C) -0.6 -1.6 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.6 -1.2 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.6 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 +2.9 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.7 +2.7 compare
nitrogen source nitrogen source nitrite 0.5mM +0.7 +2.3 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.7 +2.2 compare