Fitness data for PP_4465 in Pseudomonas putida KT2440

putative Porin
SEED: Outer membrane porin, OprD family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -1.5 compare
carbon source Tween 20 (C) -0.4 -1.6 compare
carbon source D-Glucose (C) -0.4 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.4 -1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 +2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4 +2.0 compare
phage P. putida Sci small MOI 0.1 +0.4 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 +1.9 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.4 +1.8 compare
temperature shift Temperature shift 10_to_30 +0.4 +2.3 compare
carbon source Myristic (C) +0.4 +1.8 compare
carbon source Valerolactone (C) +0.4 +1.9 compare
carbon source 3-Hydroxydecanoic (C) +0.4 +2.2 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.0 compare
phage P. putida PUT 7 MOI 1 +0.5 +2.9 compare
phage P. putida Missley MOI 0.1 +0.9 +3.8 compare