Fitness data for PP_4463 in Pseudomonas putida KT2440

Carbon-nitrogen hydrolase family protein
SEED: FIG003879: Predicted amidohydrolase / Aliphatic amidase AmiE (EC 3.5.1.4)
KEGG: nitrilase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source carbon source D-Glucose 55.5 mM -0.6 -2.8 compare
carbon source L-Leucine (C) -0.4 -2.5 compare
carbon source 3-Hydroxydecanoic (C) -0.4 -2.2 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.4 -2.0 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.4 -1.9 compare
nitrogen source TNT (N) -0.4 -2.8 compare
nitrogen source Ammonium chloride (N) -0.4 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 +2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.9 compare
phage P. putida Sci Big MOI 0.1 +0.4 +2.0 compare
temperature shift Temperature shift 30_to_34; with MOPS +0.4 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.2 compare
phage P. putida PUT 7 MOI 1 +0.5 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.8 compare
carbon source ferulate (C); with MOPS +0.5 +2.0 compare
phage P. putida Sci small MOI 0.1 +0.7 +4.0 compare
phage P. putida Missley MOI 0.1 +0.7 +4.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +3.0 compare