Fitness data for PP_4457 in Pseudomonas putida KT2440

opine oxidase subunit B
SEED: D-nopaline/octopine oxidase subunit B @ Opine oxidase subunit B

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source D-Glucose (C) -0.4 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.3 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.4 compare
nitrogen source nitrogen source nitrite 1mM -0.3 -1.7 compare
carbon source butyrate (C) -0.3 -1.7 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.3 -2.0 compare
pH pH 7 -0.3 -1.8 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.3 -1.2 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.3 -1.8 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.3 -1.9 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.3 +1.8 compare
phage PUT 8 MOI 1 +0.3 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 +1.6 compare
pH Growth at pH6 and (C) Trisodium citrate +0.3 +1.9 compare
temperature shift Temperature shift 30_to_25 +0.3 +2.0 compare
nitrogen source 2,6-diaminopimelic (N) +0.4 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.5 +2.6 compare
phage P. putida PUT 7 MOI 1 +0.7 +4.8 compare
phage P. putida Missley MOI 0.1 +0.7 +4.7 compare