Fitness data for PP_4426 in Pseudomonas putida KT2440

Amino acid ABC transporter, permease protein
SEED: amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
KEGG: polar amino acid transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
temperature Growth at 25C; with MOPS -1.7 -3.5 compare
carbon source acetate (C) -1.7 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -2.3 compare
no stress control Growth with no stress -1.0 -2.0 compare
pH Growth at pH6 and (C) Trisodium citrate -0.9 -1.4 compare
carbon source Trisodium citrate 10 mM (C) -0.9 -2.5 compare
lb outgrowth control more dilute start LB outgrowth control more dilute start -0.9 -2.3 compare
nitrogen source nitrogen source nitrate 5mM -0.9 -2.1 compare
pH Growth at pH9 and (C) Trisodium citrate -0.9 -1.6 compare
temperature Growth at 30C; with MOPS -0.7 -0.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.7 -1.9 compare
carbon source L-Alanine (C) -0.7 -2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +1.6 compare
nitrogen source nitrite (N) +0.8 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.3 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol +0.9 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +1.0 +1.9 compare
phage P. putida Missley MOI 0.1 +1.1 +4.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 +1.8 compare