Fitness data for PP_4346 in Pseudomonas putida KT2440

D-alanine--D-alanine ligase A
SEED: D-alanine--D-alanine ligase (EC 6.3.2.4)
KEGG: D-alanine-D-alanine ligase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.6 -3.9 compare
pH Growth at pH8 and (C) D-Glucose -0.4 -2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -2.3 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.4 -2.4 compare
nitrogen source 2,6-diaminopimelic (N) -0.4 -2.3 compare
stress R2A with Fusaric 480 ug/mL -0.4 -2.2 compare
carbon source Ethyl decanoate and D-Glucose (C)s -0.4 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -1.7 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.3 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.4 compare
carbon source acetate (C) -0.3 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.3 +2.5 compare
phage PUT8 MOI 10 +0.3 +2.1 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +1.5 compare
phage P. putida Sci small MOI 0.1 +0.4 +1.7 compare
pH Growth at pH6 and (C) Trisodium citrate +0.4 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.9 compare
phage PUT8 MOI 10 +0.5 +3.4 compare