Fitness data for PP_4341 in Pseudomonas putida KT2440

RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons
SEED: RNA polymerase sigma factor for flagellar operon
KEGG: RNA polymerase sigma factor for flagellar operon FliA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 2.0)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -4.1 -6.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -3.4 -4.8 compare
micoeukaryotes C.elegans, mixed culture-2 -3.1 -8.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.6 -8.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -2.4 -8.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.4 -10.2 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -2.2 -5.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.2 -6.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.1 -9.6 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -2.0 -9.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -2.0 -5.6 compare
carbon source L-Phenylalanine 5 mM (C) -2.0 -8.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +2.0 +14.2 compare
stress 1-Pentanol 0.3 vol% +2.0 +11.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +2.0 +13.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +2.1 +14.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +2.1 +14.9 compare
stress 3-methyl-1-butanol 0.4 vol% +2.2 +16.5 compare
dilutelb LB 0.1x with 55.5 mM D-Glucose +2.2 +8.7 compare
stress Geraniol 1 vol% +3.5 +23.5 compare