Fitness data for PP_4295 in Pseudomonas putida KT2440

TetR family transcriptional regulator
KEGG: TetR/AcrR family transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source Urea (N); with MOPS -0.9 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.9 -2.2 compare
nitrogen source NAG (N); with MOPS -0.8 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -3.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -4.1 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.7 -3.0 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -3.2 compare
pH Valerolactone (C) pH 6.5 -0.6 -3.3 compare
nitrogen source Hippuric (N) -0.6 -3.5 compare
nitrogen source DL-2-Aminobutyric (N) -0.6 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.6 compare
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -0.6 -2.7 compare
micoeukaryotes C.elegans, mixed culture-2 +0.5 +2.4 compare
carbon source L-Lysine (C) +0.6 +3.5 compare
carbon source L-Lysine (C) +0.6 +3.8 compare
carbon source Crotonic (C) +0.6 +3.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.7 +2.5 compare
carbon source D-Lysine 10 mM (C) +0.8 +4.9 compare
carbon source D-Lysine 10 mM (C) +1.4 +9.5 compare