Fitness data for PP_4260 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Putative analog of CcoH, COG3198
KEGG: hypothetical protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.1)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -4.2 -2.9 compare
micoeukaryotes C.elegans, mixed culture-1 -3.7 -6.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.4 -4.9 compare
carbon source ferulate (C); with MOPS -2.3 -5.1 compare
micoeukaryotes C.elegans, mixed culture-2 -2.1 -5.1 compare
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.9 -4.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 -4.1 compare
stress Geraniol 1 vol% -1.5 -5.9 compare
micoeukaryotes Dictyostellum sp.mixed culture-1 -1.5 -2.8 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 -3.4 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 -3.7 compare
reactor_pregrowth Adaptation in M9 media timecourse 1; day 2 -1.3 -3.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.3 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 -1.5 compare
carbon source ferulate (C); with MOPS -1.2 -2.4 compare
microaerobic m9 microaerobic M9 -1.2 -3.7 compare
carbon source acetate (C) -1.1 -2.1 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +1.1 +2.9 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +1.2 +5.9 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +1.5 +3.1 compare