Fitness data for PP_4259 in Pseudomonas putida KT2440

Iron-sulfur cluster-binding protein
SEED: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
micoeukaryotes C.elegans, mixed culture-1 -2.2 -7.9 compare
micoeukaryotes C.elegans, mixed culture-2 -1.2 -4.6 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -4.7 compare
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.9 -3.3 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -4.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.9 -2.2 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -4.1 compare
phage P. putida PUT 7 MOI 1 -0.8 -3.1 compare
carbon source ferulate (C); with MOPS -0.8 -2.4 compare
stress Geraniol 1 vol% -0.8 -4.0 compare
carbon source acetate (C) -0.8 -1.9 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.7 -3.1 compare
carbon source L-Lysine 10 mM (C) -0.7 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -2.8 compare
carbon source D-Glucuronic Acid (C) -0.7 -4.2 compare
nitrogen source NAG (N); with MOPS -0.7 -1.7 compare
nitrogen source 2,6-diaminopimelic (N) -0.7 -2.1 compare
carbon source ferulate (C); with MOPS -0.6 -1.7 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.7 +4.6 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.8 +3.5 compare