Fitness data for PP_4244 in Pseudomonas putida KT2440

alternative sigma factor
SEED: Sigma factor PvdS, controling pyoverdin biosynthesis
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -3.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -4.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -3.9 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 -2.6 compare
pH Growth at pH8 and (C) D-Glucose -0.7 -2.2 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6 +2.9 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X +0.6 +4.1 compare
phage moi 100 Time6-phageFRS +0.6 +4.3 compare
nophagecontrol TIme6-nophage +0.7 +5.3 compare
reactor_pregrowth Adaptation in M9 media timecourse 3; day 2 +0.7 +4.3 compare
phage moi 100 Time6-phageFRS +0.7 +5.6 compare
reactor_pregrowth Adaptation in M9 media timecourse 3; day 3 +0.8 +5.5 compare
reactor_pregrowth Adaptation in M9 media timecourse 1; day 2 +0.9 +6.6 compare
reactor_pregrowth Adaptation in M9 media timecourse 1; day 3 +0.9 +5.5 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO. +1.0 +6.3 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +1.0 +6.1 compare
reactor_pregrowth Adaptation in M9 media timecourse 2; day 3 +1.1 +7.3 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +1.1 +7.0 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +1.3 +7.7 compare