Fitness data for PP_4236 in Pseudomonas putida KT2440

putative Thiol:disulfide interchange protein dsbE
SEED: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -2.1 -2.9 compare
stress 3-methyl-3-butenol (commercial) 0.25 vol% -1.7 -5.7 compare
stress 3-methyl-3-butenol (pure) 0.25 vol% -1.6 -5.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.6 -2.9 compare
carbon source Valerolactone (C) -1.3 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.3 -2.1 compare
stress 2-Piperidinone 3 vol% -1.3 -5.1 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -1.2 -3.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 -2.5 compare
pH Valerolactone (C) pH 6.5 -1.1 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -2.3 compare
stress R2A with Fusaric 240 ug/mL -1.0 -3.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.0 -3.0 compare
stress 3-methyl-1-butanol 0.4 vol% -1.0 -2.6 compare
nitrogen source Propandiamine (N) -1.0 -1.4 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.0 -2.7 compare
phage P. putida Sci small MOI 0.1 -1.0 -1.5 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -1.0 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.0 -1.8 compare
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL +1.0 +4.2 compare